Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71580 | Canola | cytosol | 30.77 | 33.9 |
| CDY42359 | Canola | cytosol | 30.77 | 32.26 |
| CDY36197 | Canola | cytosol | 16.15 | 16.28 |
| GSMUA_Achr11P... | Banana | cytosol | 16.15 | 8.5 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 16.15 | 8.5 |
| EES18108 | Sorghum | cytosol | 16.92 | 8.37 |
| CDX91447 | Canola | cytosol, mitochondrion | 3.08 | 8.16 |
| KRH65626 | Soybean | nucleus | 16.15 | 7.95 |
| KRH76010 | Soybean | endoplasmic reticulum | 16.15 | 7.95 |
| CDX70008 | Canola | cytosol | 16.15 | 7.81 |
| CDY02821 | Canola | cytosol | 16.15 | 7.64 |
| Os05t0368300-01 | Rice | nucleus | 15.38 | 7.6 |
| CDY14056 | Canola | cytosol | 16.92 | 7.56 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 15.38 | 7.55 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 15.38 | 7.55 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 15.38 | 7.55 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 15.38 | 7.55 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 15.38 | 7.55 |
| CDX81032 | Canola | extracellular | 16.15 | 7.53 |
| CDY58877 | Canola | cytosol | 16.15 | 7.53 |
| CDY60025 | Canola | cytosol | 16.15 | 7.37 |
| CDX99006 | Canola | extracellular | 16.15 | 7.29 |
| CDY32986 | Canola | cytosol | 16.15 | 7.29 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 16.92 | 7.28 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 16.92 | 7.24 |
| KXG32490 | Sorghum | cytosol | 7.69 | 7.19 |
| Os02t0105900-01 | Rice | nucleus | 14.62 | 7.17 |
| EES00734 | Sorghum | cytosol | 14.62 | 7.17 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 16.92 | 7.14 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 13.85 | 7.14 |
| CDY57385 | Canola | cytosol, plastid | 16.15 | 7.05 |
| CDY32700 | Canola | extracellular | 16.15 | 6.98 |
| CDY05015 | Canola | cytosol | 16.15 | 6.89 |
| EER90550 | Sorghum | cytosol | 13.85 | 6.82 |
| CDX91445 | Canola | cytosol | 8.46 | 6.79 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 16.15 | 6.75 |
| CDY69841 | Canola | mitochondrion | 15.38 | 6.43 |
| CDY54450 | Canola | cytosol | 4.62 | 4.92 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 3.08 | 4.71 |
| CDY04355 | Canola | cytosol | 6.92 | 4.59 |
| Zm00001d010037_P001 | Maize | mitochondrion | 4.62 | 4.48 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 5.38 | 4.27 |
| CDY68858 | Canola | cytosol | 3.08 | 3.42 |
| Zm00001d010387_P001 | Maize | plastid | 4.62 | 3.31 |
| CDY52257 | Canola | cytosol, mitochondrion | 0.77 | 2.44 |
| Zm00001d049253_P001 | Maize | extracellular | 1.54 | 0.93 |
Protein Annotations
| EnsemblPlants:CDY00352 | EnsemblPlantsGene:GSBRNA2T00109946001 | Gene3D:3.10.290.40 | GO:A0A078EGV7 | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS |
| PFAM:PF08071 | ProteinID:CDY00352 | ProteinID:CDY00352.1 | ScanProsite:PS00528 | UniParc:UPI0004EE1BDA | MapMan:35.2 |
Description
BnaC07g14740D
Coordinates
chrLK031918:-:2553..4018
Molecular Weight (calculated)
14911.3 Da
IEP (calculated)
9.085
GRAVY (calculated)
0.101
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MICDDLSYTH EGVPDRFKTI EYYGFTSSYQ IQLYPYSFIF NSFYSSPTQA AITKDLSLTV AEDLSTLCLV LYPTWLLWLV QFPLSLMNAG RLCISLAKAI
101: GLKKHMKRLN APKHWMLDKL GVRTKGHLLP
101: GLKKHMKRLN APKHWMLDKL GVRTKGHLLP
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGKC VHNR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGKC VHNR
Arabidopsis Description
RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.