Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G58420.1 | Thale cress | mitochondrion | 89.82 | 94.27 |
| CDX70008 | Canola | cytosol | 89.82 | 91.82 |
| CDX91445 | Canola | cytosol | 53.82 | 91.36 |
| Solyc06g007360.2.1 | Tomato | plastid | 86.18 | 89.77 |
| CDX81032 | Canola | extracellular | 90.55 | 89.25 |
| CDY58877 | Canola | cytosol | 90.55 | 89.25 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 79.64 | 88.66 |
| GSMUA_Achr11P... | Banana | cytosol | 79.27 | 88.26 |
| Solyc02g070360.2.1 | Tomato | nucleus | 83.64 | 87.12 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 83.64 | 87.12 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 83.64 | 87.12 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 83.64 | 87.12 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 83.27 | 86.74 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 83.27 | 86.74 |
| CDY32700 | Canola | extracellular | 94.91 | 86.71 |
| CDY60025 | Canola | cytosol | 89.82 | 86.67 |
| CDY32986 | Canola | cytosol | 90.55 | 86.46 |
| CDY14056 | Canola | cytosol | 91.27 | 86.25 |
| CDX99006 | Canola | extracellular | 90.18 | 86.11 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 82.55 | 85.66 |
| EER90550 | Sorghum | cytosol | 82.18 | 85.61 |
| Os02t0105900-01 | Rice | nucleus | 82.18 | 85.28 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 81.82 | 84.91 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 81.82 | 84.91 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 81.82 | 84.91 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 81.82 | 84.91 |
| EES00734 | Sorghum | cytosol | 81.82 | 84.91 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 77.09 | 84.8 |
| CDY57385 | Canola | cytosol, plastid | 91.27 | 84.23 |
| Os05t0368300-01 | Rice | nucleus | 80.36 | 84.03 |
| CDX91447 | Canola | cytosol, mitochondrion | 14.91 | 83.67 |
| EES18108 | Sorghum | cytosol | 80.0 | 83.65 |
| CDY05015 | Canola | cytosol | 91.27 | 82.3 |
| CDY69841 | Canola | mitochondrion | 90.91 | 80.39 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 73.45 | 80.16 |
| PGSC0003DMT400052955 | Potato | cytosol | 54.18 | 80.11 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 86.18 | 77.96 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 86.91 | 77.6 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 84.36 | 74.6 |
| KXG32490 | Sorghum | cytosol | 36.0 | 71.22 |
| CDY54450 | Canola | cytosol | 27.27 | 61.48 |
| CDY52257 | Canola | cytosol, mitochondrion | 8.73 | 58.54 |
| CDY68858 | Canola | cytosol | 17.45 | 41.03 |
| CDY04355 | Canola | cytosol | 22.91 | 32.14 |
| CDY42359 | Canola | cytosol | 8.0 | 17.74 |
| CDY71580 | Canola | cytosol | 7.27 | 16.95 |
| CDY00352 | Canola | cytosol | 7.64 | 16.15 |
| CDY36197 | Canola | cytosol | 5.82 | 12.4 |
Protein Annotations
| MapMan:17.1.3.1.5 | Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | InterPro:40S_S4_C | GO:A0A078ENS9 |
| EnsemblPlants:CDY02821 | ProteinID:CDY02821 | ProteinID:CDY02821.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00114999001 | InterPro:IPR002942 | InterPro:IPR014722 |
| InterPro:IPR038237 | InterPro:KOW | HAMAP:MF_00485 | PFAM:PD002667 | PFAM:PF00467 | PFAM:PF00900 |
| PFAM:PF01479 | PFAM:PF08071 | PFAM:PF16121 | PIRSF:PIRSF002116 | ScanProsite:PS00528 | PFscan:PS50889 |
| PANTHER:PTHR11581 | PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | InterPro:S4_RNA-bd | SMART:SM00739 | UniParc:UPI0004EE6CB9 | SEG:seg |
Description
BnaC02g10680D
Coordinates
chrLK031937:+:606728..608387
Molecular Weight (calculated)
31338.6 Da
IEP (calculated)
10.745
GRAVY (calculated)
-0.443
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MCHTFEKLCL HFQTPTMTRG LKKHLKRLNA PKIWGLDKLG GAFAPKPSSG PHKSRECLPL VLIIRNKLKY ALTYREVISI LMQRHIQVDG KVRTDKTYPA
101: GFMDVVSIPK TNENFRLLYD TKGRFRLHSI KDEEAKFKLC KVRTISFGQK GIPYLNTYDG RTIRYPDPLI KPNDTIKLDL EENKVVEFIK FDVGNVVMVT
201: GGRNRGRVGV IKNREKHKGS FETIHIQDAT GHEFATRLGN VFTLGKGTKP WVSLPKGKGI KLTIIEEARK RLAAQ
101: GFMDVVSIPK TNENFRLLYD TKGRFRLHSI KDEEAKFKLC KVRTISFGQK GIPYLNTYDG RTIRYPDPLI KPNDTIKLDL EENKVVEFIK FDVGNVVMVT
201: GGRNRGRVGV IKNREKHKGS FETIHIQDAT GHEFATRLGN VFTLGKGTKP WVSLPKGKGI KLTIIEEARK RLAAQ
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
Arabidopsis Description
RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.