Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 35.25 | 54.44 |
| GSMUA_Achr11P... | Banana | cytosol | 76.98 | 43.32 |
| EES00734 | Sorghum | cytosol | 82.01 | 43.02 |
| PGSC0003DMT400052955 | Potato | cytosol | 57.55 | 43.01 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 75.54 | 42.51 |
| VIT_13s0067g01820.t01 | Wine grape | cytosol | 74.82 | 42.28 |
| EER90550 | Sorghum | cytosol | 79.86 | 42.05 |
| KRH08064 | Soybean | nucleus | 76.26 | 40.15 |
| KRH76010 | Soybean | endoplasmic reticulum | 76.26 | 40.15 |
| KRH73264 | Soybean | endoplasmic reticulum | 76.26 | 40.15 |
| KRH65626 | Soybean | nucleus | 76.26 | 40.15 |
| EES18108 | Sorghum | cytosol | 75.54 | 39.92 |
| Solyc06g007360.2.1 | Tomato | plastid | 75.54 | 39.77 |
| KRH69777 | Soybean | endoplasmic reticulum | 75.54 | 39.77 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 71.22 | 39.6 |
| KRH14914 | Soybean | nucleus | 74.82 | 39.39 |
| Solyc02g070360.2.1 | Tomato | nucleus | 74.1 | 39.02 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 74.1 | 39.02 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 74.1 | 39.02 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 74.1 | 39.02 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 74.1 | 39.02 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 74.1 | 39.02 |
| AT2G17360.1 | Thale cress | mitochondrion | 72.66 | 38.7 |
| AT5G58420.1 | Thale cress | mitochondrion | 72.66 | 38.55 |
| AT5G07090.1 | Thale cress | mitochondrion | 72.66 | 38.55 |
| Bra028708.1-P | Field mustard | cytosol | 72.66 | 38.55 |
| CDX70008 | Canola | cytosol | 71.22 | 36.8 |
| VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 74.1 | 36.52 |
| Bra005923.1-P | Field mustard | cytosol | 72.66 | 36.2 |
| CDY02821 | Canola | cytosol | 71.22 | 36.0 |
| CDY58877 | Canola | cytosol | 71.94 | 35.84 |
| CDY60025 | Canola | cytosol | 72.66 | 35.44 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 76.98 | 35.2 |
| CDX81032 | Canola | extracellular | 70.5 | 35.13 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 77.7 | 35.06 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 75.54 | 34.77 |
| CDY32986 | Canola | cytosol | 71.94 | 34.72 |
| CDX99006 | Canola | extracellular | 71.94 | 34.72 |
| CDY14056 | Canola | cytosol | 72.66 | 34.71 |
| CDY57385 | Canola | cytosol, plastid | 71.94 | 33.56 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 74.82 | 33.44 |
| CDY05015 | Canola | cytosol | 72.66 | 33.11 |
| CDY32700 | Canola | extracellular | 70.5 | 32.56 |
| Bra020369.1-P | Field mustard | cytosol | 69.78 | 32.23 |
| CDY69841 | Canola | mitochondrion | 71.94 | 32.15 |
| KRH04718 | Soybean | cytosol | 43.88 | 31.77 |
| KRH04720 | Soybean | cytosol, endoplasmic reticulum | 46.04 | 31.37 |
| VIT_00s0252g00080.t01 | Wine grape | nucleus | 23.74 | 30.28 |
| CDY54450 | Canola | cytosol | 23.74 | 27.05 |
| Bra005118.1-P | Field mustard | cytosol | 23.74 | 27.05 |
| CDX91445 | Canola | cytosol | 24.46 | 20.99 |
| CDY04355 | Canola | cytosol | 20.14 | 14.29 |
| Bra033109.1-P | Field mustard | cytosol | 11.51 | 13.68 |
| CDY68858 | Canola | cytosol | 11.51 | 13.68 |
| CDY42359 | Canola | cytosol | 9.35 | 10.48 |
| CDY71580 | Canola | cytosol | 8.63 | 10.17 |
| CDY00352 | Canola | cytosol | 7.19 | 7.69 |
| CDY52257 | Canola | cytosol, mitochondrion | 1.44 | 4.88 |
| CDY36197 | Canola | cytosol | 3.6 | 3.88 |
| CDX91447 | Canola | cytosol, mitochondrion | 0.72 | 2.04 |
Protein Annotations
| Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | MapMan:35.1 | UniProt:A0A1B6Q3J2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR038237 | EnsemblPlants:KXG32490 | ProteinID:KXG32490 |
| ProteinID:KXG32490.1 | PFAM:PD002667 | PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Ribosomal_S4e |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | EnsemblPlantsGene:SORBI_3003G161300 | UniParc:UPI00081AE1A3 | : | : |
Description
hypothetical protein
Coordinates
chr3:+:19197292..19198533
Molecular Weight (calculated)
15939.5 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.173
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSCPVLAEY GLKSLGHLRT SIFGLHVLVD GKFRTDKTYG FMDVISIPKT GENYRILYDT KGRFRLHSVR DEDAKFKLCK VRSVQFGQKG IPYLNTYDGR
101: TIRYPDPLIK ANDTIKIYLV TNKIVDFIKF DVGNVVMVH
101: TIRYPDPLIK ANDTIKIYLV TNKIVDFIKF DVGNVVMVH
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.