CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08064	Soybean	nucleus	99.62	99.62
KRH73264	Soybean	endoplasmic reticulum	99.24	99.24
KRH14914	Soybean	nucleus	98.48	98.48
KRH76010	Soybean	endoplasmic reticulum	95.45	95.45
KRH65626	Soybean	nucleus	95.45	95.45
GSMUA_Achr5P27000_001	Banana	cytosol	87.88	93.93
GSMUA_Achr11P...	Banana	cytosol	87.88	93.93
AT2G17360.1	Thale cress	mitochondrion	91.29	92.34
AT5G07090.1	Thale cress	mitochondrion	91.29	91.98
Solyc06g007360.2.1	Tomato	plastid	91.67	91.67
AT5G58420.1	Thale cress	mitochondrion	90.91	91.6
EER90550	Sorghum	cytosol	91.29	91.29
EES00734	Sorghum	cytosol	91.29	90.94
Bra028708.1-P	Field mustard	cytosol	90.15	90.84
Os01t0358400-01	Rice	nucleus, plasma membrane	90.91	90.57
Solyc02g070360.2.1	Tomato	nucleus	90.53	90.53
Os02t0105900-01	Rice	nucleus	90.53	90.19
Solyc02g070350.2.1	Tomato	nucleus, unclear	90.15	90.15
Solyc02g070340.2.1	Tomato	mitochondrion	90.15	90.15
Solyc02g070330.2.1	Tomato	mitochondrion	90.15	90.15
Solyc02g070320.2.1	Tomato	nucleus, unclear	89.77	89.77
PGSC0003DMT400054543	Potato	mitochondrion	89.77	89.77
EES18108	Sorghum	cytosol	89.39	89.73
TraesCS1D01G101600.1	Wheat	cytosol	89.39	89.06
TraesCS1B01G120600.1	Wheat	cytosol	89.39	89.06
HORVU1Hr1G021720.1	Barley	cytosol	89.39	89.06
TraesCS1A01G092900.1	Wheat	golgi, nucleus	89.39	89.06
Os05t0368300-01	Rice	nucleus	88.64	88.97
Solyc04g016350.1.1	Tomato	nucleus, unclear	82.58	87.2
Bra005923.1-P	Field mustard	cytosol	89.39	84.59
TraesCS1A01G232700.1	Wheat	cytosol	79.17	82.94
PGSC0003DMT400052955	Potato	cytosol	57.58	81.72
GSMUA_Achr3P23970_001	Banana	cytosol	93.56	81.25
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	93.56	80.19
GSMUA_Achr2P01640_001	Banana	cytosol	93.18	79.1
Bra020369.1-P	Field mustard	cytosol	88.26	77.41
KXG32490	Sorghum	cytosol	39.77	75.54
KRH04718	Soybean	cytosol	48.11	66.15
KRH04720	Soybean	cytosol, endoplasmic reticulum	50.38	65.2
Bra005118.1-P	Field mustard	cytosol	26.89	58.2
Bra033109.1-P	Field mustard	cytosol	17.8	40.17

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	UniProt:A0A0R4J2M7
EMBL:ACUP02000729	EnsemblPlantsGene:GLYMA_02G047800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	EnsemblPlants:KRH69777	ProteinID:KRH69777	ProteinID:KRH69777.1	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363
SMART:SM00739	UniParc:UPI00019AA890	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4396176..4398689

Molecular Weight (calculated)

29903.8 Da

IEP (calculated)

10.891

GRAVY (calculated)

-0.404

Length

264 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILILRN RLKYALTYRE VIAILMQRHV LVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSVIDDEAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIRANDTI KLDLEENKIV DFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHV QDATGHEFAT RMGNVFTIGK GTKPWISLPK GKGIKLSIIE EARKRIAAQQ ATAA

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.