CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0358400-01	Rice	nucleus, plasma membrane	98.49	98.49
EER90550	Sorghum	cytosol	96.98	97.35
EES18108	Sorghum	cytosol	91.32	92.02
KRH08064	Soybean	nucleus	91.32	91.67
GSMUA_Achr11P...	Banana	cytosol	85.28	91.5
KRH73264	Soybean	endoplasmic reticulum	90.94	91.29
KRH69777	Soybean	endoplasmic reticulum	90.94	91.29
GSMUA_Achr5P27000_001	Banana	cytosol	84.91	91.09
KRH76010	Soybean	endoplasmic reticulum	90.19	90.53
KRH65626	Soybean	nucleus	90.19	90.53
KRH14914	Soybean	nucleus	90.19	90.53
AT5G07090.1	Thale cress	mitochondrion	87.92	88.93
AT5G58420.1	Thale cress	mitochondrion	87.92	88.93
AT2G17360.1	Thale cress	mitochondrion	87.55	88.89
VIT_13s0067g01820.t01	Wine grape	cytosol	82.26	88.62
Solyc06g007360.2.1	Tomato	plastid	87.92	88.26
Bra028708.1-P	Field mustard	cytosol	87.17	88.17
Solyc02g070360.2.1	Tomato	nucleus	87.17	87.5
Solyc02g070350.2.1	Tomato	nucleus, unclear	86.79	87.12
Solyc02g070340.2.1	Tomato	mitochondrion	86.79	87.12
Solyc02g070330.2.1	Tomato	mitochondrion	86.79	87.12
Solyc02g070320.2.1	Tomato	nucleus, unclear	86.42	86.74
PGSC0003DMT400054543	Potato	mitochondrion	86.42	86.74
CDX70008	Canola	cytosol	86.42	85.13
Solyc04g016350.1.1	Tomato	nucleus, unclear	80.0	84.8
CDX91445	Canola	cytosol	51.7	84.57
VIT_00s0252g00080.t01	Wine grape	nucleus	34.34	83.49
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	88.3	82.98
CDY58877	Canola	cytosol	86.79	82.44
Bra005923.1-P	Field mustard	cytosol	86.42	82.08
KXG32490	Sorghum	cytosol	43.02	82.01
CDY02821	Canola	cytosol	84.91	81.82
CDX81032	Canola	extracellular	86.04	81.72
CDY60025	Canola	cytosol	87.55	81.4
CDY32986	Canola	cytosol	87.17	80.21
CDX99006	Canola	extracellular	86.79	79.86
CDY14056	Canola	cytosol	87.17	79.38
GSMUA_Achr3P23970_001	Banana	cytosol	90.94	79.28
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	91.32	78.57
VIT_06s0004g07150.t01	Wine grape	cytosol	89.06	78.15
CDY57385	Canola	cytosol, plastid	87.55	77.85
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	26.42	77.78
GSMUA_Achr2P01640_001	Banana	cytosol	90.57	77.17
PGSC0003DMT400052955	Potato	cytosol	53.96	76.88
CDX91447	Canola	cytosol, mitochondrion	13.96	75.51
CDY05015	Canola	cytosol	86.79	75.41
CDY69841	Canola	mitochondrion	87.17	74.28
CDY32700	Canola	extracellular	84.15	74.09
Bra020369.1-P	Field mustard	cytosol	83.77	73.75
KRH04718	Soybean	cytosol	44.91	61.98
KRH04720	Soybean	cytosol, endoplasmic reticulum	46.04	59.8
CDY52257	Canola	cytosol, mitochondrion	8.68	56.1
Bra005118.1-P	Field mustard	cytosol	25.28	54.92
CDY54450	Canola	cytosol	25.28	54.92
Bra033109.1-P	Field mustard	cytosol	17.36	39.32
CDY68858	Canola	cytosol	17.36	39.32
CDY04355	Canola	cytosol	22.26	30.1
CDY42359	Canola	cytosol	7.92	16.94
CDY71580	Canola	cytosol	7.17	16.1
CDY00352	Canola	cytosol	7.17	14.62
CDY36197	Canola	cytosol	5.66	11.63

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EntrezGene:8075349
UniProt:C5XJZ0	EnsemblPlants:EES00734	ProteinID:EES00734	ProteinID:EES00734.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627
GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485
PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121
PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2
InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd
SMART:SM00363	SMART:SM00739	EnsemblPlantsGene:SORBI_3003G160900	unigene:Sbi.5858	UniParc:UPI0001A845B0	RefSeq:XP_002455614.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:19155008..19158588

Molecular Weight (calculated)

29880.7 Da

IEP (calculated)

10.822

GRAVY (calculated)

-0.435

Length

265 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILIIRN RLKYALTYRE VISILMQRHV LVDGKVRTDK TYPSGFMDVI SIPKTGENYR
101: LLYDTKGRFR LHSVRDEDAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KIDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKNREK
201: HKGSFETIHV EDALGHAFAT RMGNVFTIGK GNKPWVSLPK GKGIKLSIIE EQRKRDAAAQ AAANA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.