CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G58420.1	Thale cress	mitochondrion	81.03	96.18
CDX91445	Canola	cytosol	49.2	94.44
CDX70008	Canola	cytosol	81.03	93.68
CDY60025	Canola	cytosol	84.89	92.63
Solyc06g007360.2.1	Tomato	plastid	77.49	91.29
CDY32986	Canola	cytosol	84.24	90.97
CDY02821	Canola	cytosol	80.39	90.91
CDX81032	Canola	extracellular	81.03	90.32
CDY58877	Canola	cytosol	81.03	90.32
Solyc02g070350.2.1	Tomato	nucleus, unclear	75.24	88.64
EER90550	Sorghum	cytosol	75.24	88.64
PGSC0003DMT400054543	Potato	mitochondrion	75.24	88.64
Solyc02g070330.2.1	Tomato	mitochondrion	75.24	88.64
Solyc02g070340.2.1	Tomato	mitochondrion	75.24	88.64
Solyc02g070360.2.1	Tomato	nucleus	75.24	88.64
CDY57385	Canola	cytosol, plastid	84.89	88.59
CDX99006	Canola	extracellular	81.99	88.54
Solyc02g070320.2.1	Tomato	nucleus, unclear	74.92	88.26
CDY14056	Canola	cytosol	81.99	87.63
GSMUA_Achr11P...	Banana	cytosol	69.45	87.45
GSMUA_Achr5P27000_001	Banana	cytosol	69.45	87.45
TraesCS1D01G101600.1	Wheat	cytosol	74.28	87.17
TraesCS1A01G092900.1	Wheat	golgi, nucleus	74.28	87.17
TraesCS1B01G120600.1	Wheat	cytosol	74.28	87.17
Os02t0105900-01	Rice	nucleus	74.28	87.17
Os01t0358400-01	Rice	nucleus, plasma membrane	74.28	87.17
HORVU1Hr1G021720.1	Barley	cytosol	74.28	87.17
EES00734	Sorghum	cytosol	74.28	87.17
Solyc04g016350.1.1	Tomato	nucleus, unclear	69.45	86.4
CDX91447	Canola	cytosol, mitochondrion	13.5	85.71
EES18108	Sorghum	cytosol	72.35	85.55
CDY05015	Canola	cytosol	83.28	84.92
Os05t0368300-01	Rice	nucleus	71.38	84.41
CDY32700	Canola	extracellular	80.71	83.39
TraesCS1A01G232700.1	Wheat	cytosol	65.92	81.35
PGSC0003DMT400052955	Potato	cytosol	48.23	80.65
GSMUA_Achr3P23970_001	Banana	cytosol	77.17	78.95
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	78.14	78.9
GSMUA_Achr2P01640_001	Banana	cytosol	77.49	77.49
KXG32490	Sorghum	cytosol	32.15	71.94
CDY54450	Canola	cytosol	23.47	59.84
CDY52257	Canola	cytosol, mitochondrion	7.72	58.54
CDY68858	Canola	cytosol	15.43	41.03
CDY04355	Canola	cytosol	19.94	31.63
CDY42359	Canola	cytosol	6.75	16.94
CDY71580	Canola	cytosol	6.11	16.1
CDY00352	Canola	cytosol	6.43	15.38
CDY36197	Canola	cytosol	5.47	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078JWH2
UniProt:A0A078JWH2	EnsemblPlants:CDY69841	ProteinID:CDY69841	ProteinID:CDY69841.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	EnsemblPlantsGene:GSBRNA2T00092828001
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	ScanProsite:PS00528
PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N
InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI0004EE6417
SEG:seg	:	:	:	:	:

Description

BnaAnng31720DBnaAnng31720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWH2]

Coordinates

chrLK040466:+:870..2739

Molecular Weight (calculated)

35694.1 Da

IEP (calculated)

11.133

GRAVY (calculated)

-0.507

Length

311 amino acids

Sequence
(BLAST)

001: MIMWKIMKKC KRYLNTIRVL LVSSHNLHHS FRAKRDKPSG SALRFRTPNM ARGLKKHLKR LNAPKHWMLD KLGGAFAPKP SSGPHKSREC LPLVLIIRNR
101: LKYALTYREV ISILMQRHIQ VDGKVRTDKT YPAGFMDVIS IPKTNENFRL LYDTKGRFRL HSIRDEEAKF KLCKVRTIQV GQKGIPYLNT YDGRTIRYPD
201: PFIKPNDTIK LDLEENKIVE FIKFDVGNVV MVTGGRNRGR VGVIKNREKH KGSFETIHIQ DSTGHEFATR LGNVFTLGKG TKPWVSLPKG KGIKLTIIEE
301: AKKRLAGQQA A

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.