Factsheet for TraesCS1A01G092900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus

Predictor Summary:

peroxisome 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G021720.1	Barley	cytosol	100.0	100.0
TraesCS1B01G120600.1	Wheat	cytosol	100.0	100.0
TraesCS1D01G101600.1	Wheat	cytosol	100.0	100.0
Os02t0105900-01	Rice	nucleus	93.96	93.96
Zm00001d012878_P001	Maize	plasma membrane	93.21	93.21
EER90550	Sorghum	cytosol	92.83	93.18
GSMUA_Achr11P...	Banana	cytosol	85.28	91.5
Zm00001d034790_P001	Maize	peroxisome	85.28	91.5
GSMUA_Achr5P27000_001	Banana	cytosol	84.91	91.09
KRH08064	Soybean	nucleus	89.43	89.77
KRH69777	Soybean	endoplasmic reticulum	89.06	89.39
KRH73264	Soybean	endoplasmic reticulum	89.06	89.39
VIT_13s0067g01820.t01	Wine grape	cytosol	82.64	89.02
AT5G07090.1	Thale cress	mitochondrion	87.92	88.93
AT5G58420.1	Thale cress	mitochondrion	87.92	88.93
AT2G17360.1	Thale cress	mitochondrion	87.55	88.89
KRH14914	Soybean	nucleus	88.3	88.64
KRH65626	Soybean	nucleus	88.3	88.64
KRH76010	Soybean	endoplasmic reticulum	88.3	88.64
Solyc06g007360.2.1	Tomato	plastid	88.3	88.64
Bra028708.1-P	Field mustard	cytosol	87.17	88.17
Zm00001d045775_P001	Maize	cytosol	31.32	86.46
Solyc02g070360.2.1	Tomato	nucleus	86.04	86.36
Solyc02g070330.2.1	Tomato	mitochondrion	85.66	85.98
Solyc02g070340.2.1	Tomato	mitochondrion	85.66	85.98
Solyc02g070350.2.1	Tomato	nucleus, unclear	85.66	85.98
TraesCS1A01G232700.1	Wheat	cytosol	81.51	85.71
PGSC0003DMT400054543	Potato	mitochondrion	85.28	85.61
Solyc02g070320.2.1	Tomato	nucleus, unclear	85.28	85.61
CDX70008	Canola	cytosol	86.42	85.13
CDX91445	Canola	cytosol	51.7	84.57
Solyc04g016350.1.1	Tomato	nucleus, unclear	79.25	84.0
Zm00001d015481_P001	Maize	cytosol	31.7	83.17
Zm00001d005432_P003	Maize	cytosol, mitochondrion	42.64	83.09
CDY58877	Canola	cytosol	86.79	82.44
Bra005923.1-P	Field mustard	cytosol	86.42	82.08
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	87.17	81.91
CDY02821	Canola	cytosol	84.91	81.82
CDX81032	Canola	extracellular	86.04	81.72
CDX91447	Canola	cytosol, mitochondrion	15.09	81.63
CDY60025	Canola	cytosol	87.55	81.4
CDY32986	Canola	cytosol	87.17	80.21
CDX99006	Canola	extracellular	86.79	79.86
GSMUA_Achr3P23970_001	Banana	cytosol	91.32	79.61
CDY14056	Canola	cytosol	87.17	79.38
VIT_00s0252g00080.t01	Wine grape	nucleus	32.45	78.9
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	91.7	78.9
PGSC0003DMT400052955	Potato	cytosol	55.09	78.49
Zm00001d019693_P001	Maize	cytosol, plastid	53.21	77.9
CDY57385	Canola	cytosol, plastid	87.55	77.85
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	26.42	77.78
GSMUA_Achr2P01640_001	Banana	cytosol	90.57	77.17
VIT_06s0004g07150.t01	Wine grape	cytosol	87.17	76.49
CDY05015	Canola	cytosol	86.79	75.41
CDY32700	Canola	extracellular	84.53	74.42
CDY69841	Canola	mitochondrion	87.17	74.28
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	32.45	74.14
Bra020369.1-P	Field mustard	cytosol	84.15	74.09
Zm00001d035215_P001	Maize	cytosol	22.26	72.84
Zm00001d004105_P001	Maize	extracellular, plastid	52.45	72.02
Zm00001d037427_P001	Maize	extracellular	36.6	71.85
Zm00001d006068_P001	Maize	cytosol	32.45	67.72
Zm00001d005247_P001	Maize	mitochondrion	36.23	67.13
Zm00001d030402_P001	Maize	cytosol, plastid	48.68	66.49
Zm00001d033604_P001	Maize	mitochondrion	32.83	65.41
Zm00001d031575_P001	Maize	extracellular	34.72	63.45
Zm00001d033737_P001	Maize	cytosol	20.75	62.5
KRH04718	Soybean	cytosol	44.15	60.94
Zm00001d031460_P001	Maize	cytosol	30.19	60.15
KRH04720	Soybean	cytosol, endoplasmic reticulum	46.04	59.8
Zm00001d000121_P001	Maize	cytosol	24.15	58.72
Zm00001d035647_P001	Maize	cytosol	31.7	57.93
Zm00001d009518_P001	Maize	cytosol	37.74	57.8
Bra005118.1-P	Field mustard	cytosol	26.04	56.56
CDY54450	Canola	cytosol	26.04	56.56
Zm00001d030502_P001	Maize	cytosol	29.81	56.43
Zm00001d037876_P001	Maize	cytosol	56.98	55.72
Zm00001d004880_P001	Maize	cytosol	21.89	54.21
Zm00001d053283_P002	Maize	cytosol	37.36	54.1
CDY52257	Canola	cytosol, mitochondrion	8.3	53.66
Zm00001d015857_P002	Maize	cytosol	24.91	52.38
Zm00001d024029_P001	Maize	cytosol	21.51	50.0
Zm00001d019999_P001	Maize	cytosol	57.36	49.35
Zm00001d052602_P001	Maize	extracellular	24.15	48.85
Zm00001d009343_P001	Maize	mitochondrion	35.09	48.44
Zm00001d051261_P001	Maize	cytosol	37.36	48.06
Zm00001d036575_P001	Maize	mitochondrion	36.23	46.6
Zm00001d005030_P009	Maize	cytosol	21.13	45.9
Zm00001d015887_P001	Maize	cytosol	24.53	43.33
Zm00001d019486_P001	Maize	cytosol	32.83	42.44
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	21.51	39.31
Zm00001d008887_P002	Maize	cytosol	39.25	39.1
Bra033109.1-P	Field mustard	cytosol	16.98	38.46
CDY68858	Canola	cytosol	16.98	38.46
Zm00001d015817_P002	Maize	plastid	38.87	37.45
Zm00001d031743_P001	Maize	cytosol	26.42	34.83
Zm00001d016333_P001	Maize	cytosol	36.6	34.64
Zm00001d045627_P001	Maize	cytosol, plastid	23.4	34.44
Zm00001d050845_P002	Maize	cytosol	23.77	31.98
Zm00001d009287_P001	Maize	cytosol	15.09	29.63
CDY04355	Canola	cytosol	21.89	29.59
Zm00001d045876_P002	Maize	plasma membrane	23.77	29.3
Zm00001d045958_P001	Maize	cytosol	38.87	27.76
Zm00001d021480_P001	Maize	plasma membrane	25.28	26.07
Zm00001d019803_P001	Maize	cytosol	22.64	24.9
Zm00001d045942_P001	Maize	cytosol	36.6	24.62
Zm00001d046153_P001	Maize	plastid	29.06	24.37
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	25.28	23.1
Zm00001d013036_P001	Maize	plastid	24.53	20.97
Zm00001d042154_P021	Maize	plastid	36.23	20.25
Zm00001d035807_P001	Maize	cytosol	25.28	18.77
CDY42359	Canola	cytosol	8.3	17.74
CDY71580	Canola	cytosol	7.55	16.95
Zm00001d001770_P002	Maize	plastid	24.91	16.75
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	19.62	15.85
Zm00001d004587_P001	Maize	plastid	14.72	15.79
CDY00352	Canola	cytosol	7.55	15.38
Zm00001d036129_P001	Maize	vacuole	21.51	14.11
CDY36197	Canola	cytosol	6.04	12.4
Zm00001d019111_P002	Maize	mitochondrion	11.7	10.58
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	26.79	9.03

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR002942	InterPro:IPR014722
InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889
PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	SUPFAM:SSF55174
EnsemblPlantsGene:TraesCS1A01G092900	EnsemblPlants:TraesCS1A01G092900.1	TIGR:cd00165	TIGR:cd06087	SEG:seg	:

Description

No Description!

Coordinates

chr1A:-:85344339..85346357

Molecular Weight (calculated)

29951.8 Da

IEP (calculated)

10.822

GRAVY (calculated)

-0.474

Length

265 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPSHWML DKLGGAFAPK PSSGPHKARE CLPLILILRN RLKYALTYRE VQSILMQRHI MVDGKVRTDK TYPAGFMDII SIPKTGENYR
101: LLYDTKGRFR LHSVRDEDAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KLDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKNREK
201: HKGTFETIHV EDAQGHQFAT RLGNVFTIGK GTKPWVSLPK GKGIKLTIIE EQRKRDAAAQ AAAKA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.