Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024029_P001 | Maize | cytosol | 33.61 | 71.05 |
| Zm00001d045876_P002 | Maize | plasma membrane | 54.77 | 61.4 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 35.27 | 47.22 |
| Zm00001d005247_P001 | Maize | mitochondrion | 25.31 | 42.66 |
| Zm00001d033604_P001 | Maize | mitochondrion | 23.24 | 42.11 |
| Zm00001d021480_P001 | Maize | plasma membrane | 40.66 | 38.13 |
| Zm00001d010037_P001 | Maize | mitochondrion | 20.75 | 37.31 |
| Zm00001d031743_P001 | Maize | cytosol | 30.29 | 36.32 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 25.31 | 33.7 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 26.56 | 33.16 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 15.77 | 32.76 |
| Zm00001d004880_P001 | Maize | cytosol | 14.52 | 32.71 |
| Zm00001d015481_P001 | Maize | cytosol | 13.69 | 32.67 |
| Zm00001d031575_P001 | Maize | extracellular | 19.5 | 32.41 |
| Zm00001d009518_P001 | Maize | cytosol | 22.82 | 31.79 |
| Zm00001d045775_P001 | Maize | cytosol | 12.45 | 31.25 |
| Zm00001d035215_P001 | Maize | cytosol | 10.37 | 30.86 |
| Zm00001d000121_P001 | Maize | cytosol | 13.69 | 30.28 |
| Zm00001d015857_P002 | Maize | cytosol | 15.77 | 30.16 |
| Zm00001d037427_P001 | Maize | extracellular | 16.18 | 28.89 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 23.24 | 28.87 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 16.18 | 28.68 |
| Zm00001d006068_P001 | Maize | cytosol | 14.52 | 27.56 |
| Zm00001d036575_P001 | Maize | mitochondrion | 21.99 | 25.73 |
| Zm00001d030502_P001 | Maize | cytosol | 14.94 | 25.71 |
| Zm00001d053283_P002 | Maize | cytosol | 18.67 | 24.59 |
| Zm00001d034790_P001 | Maize | peroxisome | 24.9 | 24.29 |
| Zm00001d031460_P001 | Maize | cytosol | 13.28 | 24.06 |
| Zm00001d015887_P001 | Maize | cytosol | 14.94 | 24.0 |
| EER90550 | Sorghum | cytosol | 26.14 | 23.86 |
| Zm00001d012878_P001 | Maize | plasma membrane | 26.14 | 23.77 |
| Zm00001d037876_P001 | Maize | cytosol | 26.56 | 23.62 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 23.65 | 23.08 |
| GSMUA_Achr11P... | Banana | cytosol | 23.24 | 22.67 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 24.9 | 22.64 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 24.9 | 22.64 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 24.9 | 22.64 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 24.9 | 22.64 |
| Os02t0105900-01 | Rice | nucleus | 24.48 | 22.26 |
| Zm00001d009343_P001 | Maize | mitochondrion | 17.43 | 21.88 |
| Zm00001d051261_P001 | Maize | cytosol | 18.67 | 21.84 |
| Zm00001d015817_P002 | Maize | plastid | 24.07 | 21.09 |
| Zm00001d019999_P001 | Maize | cytosol | 25.73 | 20.13 |
| Zm00001d035647_P001 | Maize | cytosol | 12.03 | 20.0 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 24.48 | 19.41 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 24.07 | 18.83 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 23.65 | 18.33 |
| Zm00001d008887_P002 | Maize | cytosol | 19.09 | 17.29 |
| Zm00001d019486_P001 | Maize | cytosol | 14.52 | 17.07 |
| Zm00001d016333_P001 | Maize | cytosol | 19.09 | 16.43 |
| Zm00001d045958_P001 | Maize | cytosol | 20.75 | 13.48 |
| Zm00001d050009_P001 | Maize | plastid | 4.98 | 12.24 |
| Zm00001d046153_P001 | Maize | plastid | 15.77 | 12.03 |
| Zm00001d045942_P001 | Maize | cytosol | 17.84 | 10.91 |
| Zm00001d042154_P021 | Maize | plastid | 20.75 | 10.55 |
| Zm00001d001770_P002 | Maize | plastid | 15.77 | 9.64 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 2.9 | 8.24 |
| Zm00001d033737_P001 | Maize | cytosol | 2.49 | 6.82 |
| Zm00001d004587_P001 | Maize | plastid | 5.81 | 5.67 |
| Zm00001d052602_P001 | Maize | extracellular | 2.9 | 5.34 |
| Zm00001d005030_P009 | Maize | cytosol | 2.49 | 4.92 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 2.9 | 4.83 |
| Zm00001d050845_P002 | Maize | cytosol | 2.9 | 3.55 |
| Zm00001d013036_P001 | Maize | plastid | 4.56 | 3.55 |
| Zm00001d035807_P001 | Maize | cytosol | 4.98 | 3.36 |
| Zm00001d009287_P001 | Maize | cytosol | 1.66 | 2.96 |
| Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 3.32 | 2.76 |
| Zm00001d036129_P001 | Maize | vacuole | 4.15 | 2.48 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 1.66 | 2.44 |
| Zm00001d010387_P001 | Maize | plastid | 1.66 | 2.21 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 5.81 | 1.78 |
| Zm00001d049253_P001 | Maize | extracellular | 1.24 | 1.39 |
| Zm00001d019111_P002 | Maize | mitochondrion | 1.66 | 1.37 |
| Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 1.66 | 1.22 |
Protein Annotations
| Gene3D:2.30.30.30 | MapMan:35.1 | UniProt:A0A1D6I0D7 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019538 | InterPro:IPR014722 | ProteinID:ONM53741.1 | PFAM:PD002667 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 |
| InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_central_region | TMHMM:TMhelix | UniParc:UPI000843AF6F | EnsemblPlantsGene:Zm00001d019803 |
| EnsemblPlants:Zm00001d019803_P001 | EnsemblPlants:Zm00001d019803_T001 | : | : | : | : |
Description
40S ribosomal protein S4-3
Coordinates
chr7:-:62982484..62986246
Molecular Weight (calculated)
27546.7 Da
IEP (calculated)
9.592
GRAVY (calculated)
-0.234
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MANIIRKCWD PNLDKRPDMD EVVRLLEALD TRKRGGMTPK GQAGGQGGNL LIDLFRHCDN PLGEKQVNNP FFHKTPSGSA RQPLQLTNDV TKMMQKHQLE
101: TPQFHQTRFS VLLNVPRSIE KFYFHVVAGI HLRDVSFLIP HSWLLAMLDD QMSFPSLRQT RTTGCFRLHP IRDEDAKFKL CNGRSVQFDV GNVVMVTGGR
201: NIGHVGVIKN WEKHKGIFEV IDVLLGAFCM LCLVFSYLLY R
101: TPQFHQTRFS VLLNVPRSIE KFYFHVVAGI HLRDVSFLIP HSWLLAMLDD QMSFPSLRQT RTTGCFRLHP IRDEDAKFKL CNGRSVQFDV GNVVMVTGGR
201: NIGHVGVIKN WEKHKGIFEV IDVLLGAFCM LCLVFSYLLY R
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.