Factsheet for Zm00001d052602_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033737_P001	Maize	cytosol	40.46	60.23
Zm00001d015481_P001	Maize	cytosol	38.93	50.49
Zm00001d005030_P009	Maize	cytosol	43.51	46.72
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	48.85	44.14
Zm00001d035215_P001	Maize	cytosol	26.72	43.21
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	38.17	43.1
Zm00001d006068_P001	Maize	cytosol	41.22	42.52
Zm00001d037427_P001	Maize	extracellular	39.69	38.52
Zm00001d005432_P003	Maize	cytosol, mitochondrion	39.69	38.24
Zm00001d009287_P001	Maize	cytosol	38.17	37.04
Zm00001d031575_P001	Maize	extracellular	40.46	36.55
Zm00001d035647_P001	Maize	cytosol	39.69	35.86
Zm00001d050845_P002	Maize	cytosol	52.67	35.03
Zm00001d005247_P001	Maize	mitochondrion	38.17	34.97
Zm00001d009518_P001	Maize	cytosol	41.98	31.79
Zm00001d033604_P001	Maize	mitochondrion	32.06	31.58
Zm00001d019693_P001	Maize	cytosol, plastid	43.51	31.49
Zm00001d050009_P001	Maize	plastid	22.9	30.61
Zm00001d004105_P001	Maize	extracellular, plastid	43.51	29.53
Zm00001d053283_P002	Maize	cytosol	40.46	28.96
Zm00001d009343_P001	Maize	mitochondrion	41.98	28.65
Zm00001d030502_P001	Maize	cytosol	30.53	28.57
Zm00001d019486_P001	Maize	cytosol	41.98	26.83
Zm00001d034790_P001	Maize	peroxisome	49.62	26.32
Zm00001d036575_P001	Maize	mitochondrion	41.22	26.21
GSMUA_Achr11P...	Banana	cytosol	48.85	25.91
GSMUA_Achr5P27000_001	Banana	cytosol	47.33	25.1
Zm00001d051261_P001	Maize	cytosol	38.17	24.27
EER90550	Sorghum	cytosol	48.85	24.24
TraesCS1B01G120600.1	Wheat	cytosol	48.85	24.15
HORVU1Hr1G021720.1	Barley	cytosol	48.85	24.15
Os02t0105900-01	Rice	nucleus	48.85	24.15
TraesCS1A01G092900.1	Wheat	golgi, nucleus	48.85	24.15
TraesCS1D01G101600.1	Wheat	cytosol	48.85	24.15
Zm00001d012878_P001	Maize	plasma membrane	48.85	24.15
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	52.67	23.79
Zm00001d008887_P002	Maize	cytosol	44.27	21.8
Zm00001d013036_P001	Maize	plastid	51.15	21.61
GSMUA_Achr3P23970_001	Banana	cytosol	49.62	21.38
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	49.62	21.1
Zm00001d037876_P001	Maize	cytosol	42.75	20.66
GSMUA_Achr2P01640_001	Banana	cytosol	48.09	20.26
Zm00001d015817_P002	Maize	plastid	41.98	20.0
Zm00001d035807_P001	Maize	cytosol	54.2	19.89
Zm00001d016333_P001	Maize	cytosol	39.69	18.57
Zm00001d004880_P001	Maize	cytosol	14.5	17.76
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	41.98	16.77
Zm00001d015857_P002	Maize	cytosol	16.03	16.67
Zm00001d019999_P001	Maize	cytosol	38.17	16.23
Zm00001d000121_P001	Maize	cytosol	12.98	15.6
Zm00001d030402_P001	Maize	cytosol, plastid	22.9	15.46
Zm00001d045958_P001	Maize	cytosol	38.93	13.75
Zm00001d036129_P001	Maize	vacuole	41.22	13.37
Zm00001d015887_P001	Maize	cytosol	15.27	13.33
Zm00001d045942_P001	Maize	cytosol	38.93	12.94
Zm00001d042154_P021	Maize	plastid	38.17	10.55
Zm00001d019111_P002	Maize	mitochondrion	22.14	9.9
Zm00001d046153_P001	Maize	plastid	22.14	9.18
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	45.04	7.51
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	4.58	7.06
Zm00001d045775_P001	Maize	cytosol	4.58	6.25
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.63	6.1
Zm00001d010387_P001	Maize	plastid	8.4	6.08
Zm00001d001770_P002	Maize	plastid	17.56	5.84
Zm00001d045627_P001	Maize	cytosol, plastid	7.63	5.56
Zm00001d049253_P001	Maize	extracellular	9.16	5.56
Zm00001d031743_P001	Maize	cytosol	8.4	5.47
Zm00001d010037_P001	Maize	mitochondrion	5.34	5.22
Zm00001d031460_P001	Maize	cytosol	4.58	4.51
Zm00001d024029_P001	Maize	cytosol	3.05	3.51
Zm00001d021480_P001	Maize	plasma membrane	6.87	3.5
Zm00001d019803_P001	Maize	cytosol	5.34	2.9
Zm00001d045876_P002	Maize	plasma membrane	4.58	2.79
Zm00001d004587_P001	Maize	plastid	4.58	2.43

Protein Annotations

Gene3D:2.40.50.740	MapMan:35.1	UniProt:A0A1D6QHY7	ProteinID:AQK57479.1	InterPro:DUF4504	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038237	PFAM:PD002667
PFAM:PF00900	PFAM:PF14953	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	UniParc:UPI000844B84E	EnsemblPlantsGene:Zm00001d052602	EnsemblPlants:Zm00001d052602_P001	EnsemblPlants:Zm00001d052602_T001	:

Description

40S ribosomal protein S4-3

Coordinates

chr4:-:194404228..194405764

Molecular Weight (calculated)

15026.7 Da

IEP (calculated)

9.324

GRAVY (calculated)

0.129

Length

131 amino acids

Sequence
(BLAST)

001: MAAAAGPYKE MLEVLLPDIL FLCTGLRPVV LVDYGGTMPQ LQENLCGLLY LARQFKLCKV RSVQFGQKGI PYLNTYDGRT IRYPDPLIKA NDTIKIDLET
101: NKIMYFIKLY LPFHRLHQVI YLVRLNVSTN S

Best Arabidopsis Sequence Match ( AT2G17360.2 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGKC VHNR

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.