Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- peroxisome 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019111_P002 | Maize | mitochondrion | 73.17 | 81.91 |
| Zm00001d033737_P001 | Maize | cytosol | 15.85 | 59.09 |
| Zm00001d015481_P001 | Maize | cytosol | 15.55 | 50.49 |
| Zm00001d005030_P009 | Maize | cytosol | 18.6 | 50.0 |
| Zm00001d035215_P001 | Maize | cytosol | 10.98 | 44.44 |
| Zm00001d052602_P001 | Maize | extracellular | 16.77 | 41.98 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 14.63 | 41.38 |
| Zm00001d006068_P001 | Maize | cytosol | 15.85 | 40.94 |
| Zm00001d037427_P001 | Maize | extracellular | 15.85 | 38.52 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 15.55 | 37.5 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 16.46 | 37.24 |
| Zm00001d005247_P001 | Maize | mitochondrion | 15.24 | 34.97 |
| Zm00001d031575_P001 | Maize | extracellular | 15.24 | 34.48 |
| Zm00001d035647_P001 | Maize | cytosol | 14.94 | 33.79 |
| Zm00001d033604_P001 | Maize | mitochondrion | 13.11 | 32.33 |
| Zm00001d050845_P002 | Maize | cytosol | 19.21 | 31.98 |
| Zm00001d009518_P001 | Maize | cytosol | 15.85 | 30.06 |
| Zm00001d009287_P001 | Maize | cytosol | 12.2 | 29.63 |
| Zm00001d053283_P002 | Maize | cytosol | 16.46 | 29.51 |
| Zm00001d009343_P001 | Maize | mitochondrion | 16.46 | 28.12 |
| Zm00001d030502_P001 | Maize | cytosol | 11.89 | 27.86 |
| Zm00001d019486_P001 | Maize | cytosol | 17.07 | 27.32 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 14.94 | 27.07 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 15.24 | 25.91 |
| Zm00001d051261_P001 | Maize | cytosol | 15.85 | 25.24 |
| Zm00001d036575_P001 | Maize | mitochondrion | 15.24 | 24.27 |
| Zm00001d050009_P001 | Maize | plastid | 7.01 | 23.47 |
| Zm00001d034790_P001 | Maize | peroxisome | 16.46 | 21.86 |
| GSMUA_Achr11P... | Banana | cytosol | 16.16 | 21.46 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 15.55 | 20.65 |
| EER90550 | Sorghum | cytosol | 16.16 | 20.08 |
| Zm00001d012878_P001 | Maize | plasma membrane | 16.16 | 20.0 |
| Zm00001d008887_P002 | Maize | cytosol | 16.16 | 19.92 |
| Zm00001d016333_P001 | Maize | cytosol | 16.77 | 19.64 |
| Os02t0105900-01 | Rice | nucleus | 15.85 | 19.62 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 15.85 | 19.62 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 15.85 | 19.62 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 15.85 | 19.62 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 15.85 | 19.62 |
| Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 17.07 | 19.31 |
| Zm00001d037876_P001 | Maize | cytosol | 15.85 | 19.19 |
| Zm00001d015817_P002 | Maize | plastid | 15.55 | 18.55 |
| Zm00001d013036_P001 | Maize | plastid | 17.07 | 18.06 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 16.46 | 17.76 |
| Zm00001d015857_P002 | Maize | cytosol | 6.71 | 17.46 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 16.16 | 17.21 |
| Zm00001d004880_P001 | Maize | cytosol | 5.49 | 16.82 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 15.85 | 16.72 |
| Zm00001d000121_P001 | Maize | cytosol | 5.49 | 16.51 |
| Zm00001d036129_P001 | Maize | vacuole | 19.82 | 16.09 |
| Zm00001d035807_P001 | Maize | cytosol | 17.38 | 15.97 |
| Zm00001d045958_P001 | Maize | cytosol | 16.77 | 14.82 |
| Zm00001d019999_P001 | Maize | cytosol | 13.72 | 14.61 |
| Zm00001d015887_P001 | Maize | cytosol | 6.1 | 13.33 |
| Zm00001d045942_P001 | Maize | cytosol | 13.72 | 11.42 |
| Zm00001d042154_P021 | Maize | plastid | 16.46 | 11.39 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 6.4 | 10.82 |
| Zm00001d046153_P001 | Maize | plastid | 8.84 | 9.18 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 16.77 | 7.0 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 1.52 | 5.88 |
| Zm00001d049253_P001 | Maize | extracellular | 3.66 | 5.56 |
| Zm00001d001770_P002 | Maize | plastid | 6.4 | 5.33 |
| Zm00001d031460_P001 | Maize | cytosol | 2.13 | 5.26 |
| Zm00001d045775_P001 | Maize | cytosol | 1.52 | 5.21 |
| Zm00001d045876_P002 | Maize | plasma membrane | 3.05 | 4.65 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 2.13 | 4.27 |
| Zm00001d010387_P001 | Maize | plastid | 2.13 | 3.87 |
| Zm00001d010037_P001 | Maize | mitochondrion | 1.52 | 3.73 |
| Zm00001d004587_P001 | Maize | plastid | 2.44 | 3.24 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 1.52 | 2.78 |
| Zm00001d024029_P001 | Maize | cytosol | 0.91 | 2.63 |
| Zm00001d031743_P001 | Maize | cytosol | 1.52 | 2.49 |
| Zm00001d021480_P001 | Maize | plasma membrane | 1.52 | 1.95 |
| Zm00001d019803_P001 | Maize | cytosol | 1.22 | 1.66 |
Protein Annotations
| Gene3D:2.40.50.740 | MapMan:35.1 | UniProt:A0A1D6PSE1 | ProteinID:AQK49624.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR038237 | PFAM:PD002667 | PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Ribosomal_S4e |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | UniParc:UPI0008442096 | EnsemblPlantsGene:Zm00001d049112 | EnsemblPlants:Zm00001d049112_P001 | EnsemblPlants:Zm00001d049112_T001 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:16437392..16446205
Molecular Weight (calculated)
36706.7 Da
IEP (calculated)
8.000
GRAVY (calculated)
0.044
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRNNGGATA LAYLLQSKEQ GEEAATRFLY PRYCVYRVRQ SRQLPLGLGL GAPSLYAAVL ARVSAAFNGP LARAVVFGVH IDGSPSFFVC SQDGSAVLVS
101: HTQWPRDFSG HLIVEGLLIA VIVFQLSTKS YKPLKKPLTE KEIDELCDEW EPELLCPPIK EGAKIDAPTL ERNKVVMEGF MTAIIQFLEA LESFYVVERD
201: GSIILFLVTL GGCHSSDYIK KMTLSLGLRD MAFHSAQLDL SPEHRRKVSI CTVDPKPHFV LVCVQFKLCK VRSVQFGQKV IPYLNTYDDR TIRYPDPLIK
301: ANDTIKIDLE TNKIMDFIKL TSSSYILS
101: HTQWPRDFSG HLIVEGLLIA VIVFQLSTKS YKPLKKPLTE KEIDELCDEW EPELLCPPIK EGAKIDAPTL ERNKVVMEGF MTAIIQFLEA LESFYVVERD
201: GSIILFLVTL GGCHSSDYIK KMTLSLGLRD MAFHSAQLDL SPEHRRKVSI CTVDPKPHFV LVCVQFKLCK VRSVQFGQKV IPYLNTYDDR TIRYPDPLIK
301: ANDTIKIDLE TNKIMDFIKL TSSSYILS
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.