Factsheet for Zm00001d046153_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004880_P001	Maize	cytosol	19.3	57.01
Zm00001d015481_P001	Maize	cytosol	18.04	56.44
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	19.3	52.59
Zm00001d015857_P002	Maize	cytosol	20.57	51.59
Zm00001d035215_P001	Maize	cytosol	12.66	49.38
Zm00001d015887_P001	Maize	cytosol	22.78	48.0
Zm00001d006068_P001	Maize	cytosol	18.67	46.46
Zm00001d005432_P003	Maize	cytosol, mitochondrion	19.94	46.32
Zm00001d037427_P001	Maize	extracellular	19.62	45.93
Zm00001d000121_P001	Maize	cytosol	15.51	44.95
Zm00001d033604_P001	Maize	mitochondrion	18.67	44.36
Zm00001d031575_P001	Maize	extracellular	20.25	44.14
Zm00001d005247_P001	Maize	mitochondrion	19.3	42.66
Zm00001d030502_P001	Maize	cytosol	18.35	41.43
Zm00001d045775_P001	Maize	cytosol	12.34	40.62
Zm00001d009518_P001	Maize	cytosol	20.89	38.15
Zm00001d004587_P001	Maize	plastid	29.43	37.65
Zm00001d019693_P001	Maize	cytosol, plastid	21.2	37.02
Zm00001d053283_P002	Maize	cytosol	21.2	36.61
Zm00001d004105_P001	Maize	extracellular, plastid	22.15	36.27
Zm00001d035647_P001	Maize	cytosol	15.82	34.48
Zm00001d033737_P001	Maize	cytosol	9.49	34.09
Zm00001d030402_P001	Maize	cytosol, plastid	20.57	33.51
Zm00001d024029_P001	Maize	cytosol	12.03	33.33
Zm00001d009343_P001	Maize	mitochondrion	19.62	32.29
Zm00001d036575_P001	Maize	mitochondrion	20.25	31.07
Zm00001d051261_P001	Maize	cytosol	19.94	30.58
Zm00001d034790_P001	Maize	peroxisome	23.1	29.55
Zm00001d031460_P001	Maize	cytosol	12.34	29.32
HORVU1Hr1G021720.1	Barley	cytosol	24.37	29.06
TraesCS1D01G101600.1	Wheat	cytosol	24.37	29.06
TraesCS1B01G120600.1	Wheat	cytosol	24.37	29.06
TraesCS1A01G092900.1	Wheat	golgi, nucleus	24.37	29.06
EER90550	Sorghum	cytosol	24.05	28.79
GSMUA_Achr11P...	Banana	cytosol	22.47	28.74
GSMUA_Achr5P27000_001	Banana	cytosol	22.47	28.74
Os02t0105900-01	Rice	nucleus	24.05	28.68
Zm00001d012878_P001	Maize	plasma membrane	24.05	28.68
Zm00001d015817_P002	Maize	plastid	24.68	28.36
Zm00001d019486_P001	Maize	cytosol	18.04	27.8
Zm00001d010037_P001	Maize	mitochondrion	11.39	26.87
Zm00001d037876_P001	Maize	cytosol	22.15	25.83
Zm00001d008887_P002	Maize	cytosol	21.52	25.56
GSMUA_Achr3P23970_001	Banana	cytosol	23.42	24.34
GSMUA_Achr2P01640_001	Banana	cytosol	23.73	24.12
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	23.42	24.03
Zm00001d016333_P001	Maize	cytosol	20.89	23.57
Zm00001d045627_P001	Maize	cytosol, plastid	13.29	23.33
Zm00001d052602_P001	Maize	extracellular	9.18	22.14
Zm00001d019999_P001	Maize	cytosol	21.2	21.75
Zm00001d005030_P009	Maize	cytosol	7.91	20.49
Zm00001d031743_P001	Maize	cytosol	12.97	20.4
Zm00001d045958_P001	Maize	cytosol	23.42	19.95
Zm00001d001770_P002	Maize	plastid	24.05	19.29
Zm00001d009287_P001	Maize	cytosol	8.23	19.26
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	8.54	18.62
Zm00001d045876_P002	Maize	plasma membrane	12.34	18.14
Zm00001d021480_P001	Maize	plasma membrane	14.24	17.51
Zm00001d050009_P001	Maize	plastid	5.38	17.35
Zm00001d045942_P001	Maize	cytosol	21.52	17.26
Zm00001d019803_P001	Maize	cytosol	12.03	15.77
Zm00001d050845_P002	Maize	cytosol	8.86	14.21
Zm00001d042154_P021	Maize	plastid	20.57	13.71
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	9.49	10.34
Zm00001d013036_P001	Maize	plastid	9.49	9.68
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	9.18	8.84
Zm00001d035807_P001	Maize	cytosol	9.81	8.68
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	2.22	8.24
Zm00001d036129_P001	Maize	vacuole	9.18	7.18
Zm00001d049253_P001	Maize	extracellular	4.43	6.48
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	3.16	6.1
Zm00001d010387_P001	Maize	plastid	3.48	6.08
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	10.44	4.2
Zm00001d019111_P002	Maize	mitochondrion	2.22	2.39

Protein Annotations

Gene3D:2.30.30.30	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6P114	ProteinID:AQL03771.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	InterPro:IPR012677	InterPro:IPR014722	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PD002667	PANTHER:PTHR44161
PANTHER:PTHR44161:SF2	InterPro:RBD_domain_sf	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e_central_region	SUPFAM:SSF54928	UniParc:UPI000845514A
EnsemblPlantsGene:Zm00001d046153	EnsemblPlants:Zm00001d046153_P001	EnsemblPlants:Zm00001d046153_T001	SEG:seg	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr9:+:67752786..67764920

Molecular Weight (calculated)

35370.3 Da

IEP (calculated)

10.481

GRAVY (calculated)

-0.284

Length

316 amino acids

Sequence
(BLAST)

001: MPKPPRPTSP CSGPTSSPSC CCVQPMPLPP SSSLQQPYHG FFPASMVSSP QPQRRTCRRP HVQLLHPLDS LPALTRFARS DRFAHRALPM PARKRPPVPA
101: PLHRRPGRCR APSTSRWRGQ ASRYQNSWIP NLRRMLMLTI TACTQSRTFY RVTEENLAAL FINCGQVVDC RILLTLCNGS TVYGVKNIDV PEGARAALNL
201: SGTVLGYYPI NVLLSKTAIA PVNETFLPRS DDEREMCART IYCTNIDKKL KVCRNGTIKI DLETNKIMDF IKFDVGNVVM MTGGRNTMRV GVIKNREKHK
301: GSFETIHVLL GAFCYV

Best Arabidopsis Sequence Match ( AT3G49390.1 )
(BLAST)

001: MAVAENAGVK VDSSGQNLDN NNTAASATET TKPPCPDDDQ SPKSDSSTPL TIDSTPETDD RINETAQKVQ TLNGFSGNGE RDNNGEIKDL ADAFSKLNPM
101: AQEFVPPSLA RSQSGVLRNG LGFTNNFAAP PKLADGNDHF PRRRRSFGQG KRRMNKRTSL AQKDDVIRRT VYVSDIDQQV TEENLAGVFI NCGQVVDCRV
201: CGDPNSVLRF AFIEFTNEEG ARAALSMSGT VLGFYPLKVL PSKTAIAPVN PTFLPRSEDE REMCVRTVYC TNIDKRITQI DLKGFFEMLC GEVHRLRLGD
301: YHHQTRIAFV EFAMAESAIA ALHCSGIVLG ALPIRVSPSK TPVRPHFPRA EFK

Arabidopsis Description

CID10Polyadenylate-binding protein-interacting protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.