Factsheet for Zm00001d035807_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033737_P001	Maize	cytosol	14.57	59.09
Zm00001d052602_P001	Maize	extracellular	19.89	54.2
Zm00001d005030_P009	Maize	cytosol	18.21	53.28
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	21.01	51.72
Zm00001d015481_P001	Maize	cytosol	13.73	48.51
Zm00001d050845_P002	Maize	cytosol	23.25	42.13
Zm00001d009287_P001	Maize	cytosol	15.69	41.48
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	13.45	41.38
Zm00001d006068_P001	Maize	cytosol	14.57	40.94
Zm00001d035215_P001	Maize	cytosol	9.24	40.74
Zm00001d037427_P001	Maize	extracellular	14.57	38.52
Zm00001d005432_P003	Maize	cytosol, mitochondrion	14.29	37.5
Zm00001d005247_P001	Maize	mitochondrion	14.29	35.66
Zm00001d035647_P001	Maize	cytosol	14.29	35.17
Zm00001d031575_P001	Maize	extracellular	14.01	34.48
Zm00001d033604_P001	Maize	mitochondrion	12.04	32.33
Zm00001d009518_P001	Maize	cytosol	15.41	31.79
Zm00001d050009_P001	Maize	plastid	8.68	31.63
Zm00001d019693_P001	Maize	cytosol, plastid	15.69	30.94
Zm00001d004105_P001	Maize	extracellular, plastid	16.25	30.05
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	23.81	29.31
Zm00001d009343_P001	Maize	mitochondrion	15.69	29.17
Zm00001d053283_P002	Maize	cytosol	14.85	28.96
Zm00001d036575_P001	Maize	mitochondrion	15.97	27.67
Zm00001d030502_P001	Maize	cytosol	10.64	27.14
Zm00001d034790_P001	Maize	peroxisome	18.77	27.13
Zm00001d019486_P001	Maize	cytosol	15.13	26.34
Zm00001d051261_P001	Maize	cytosol	15.13	26.21
GSMUA_Achr11P...	Banana	cytosol	17.93	25.91
EER90550	Sorghum	cytosol	19.05	25.76
Zm00001d012878_P001	Maize	plasma membrane	19.05	25.66
Os02t0105900-01	Rice	nucleus	19.05	25.66
Zm00001d013036_P001	Maize	plastid	22.13	25.48
TraesCS1D01G101600.1	Wheat	cytosol	18.77	25.28
HORVU1Hr1G021720.1	Barley	cytosol	18.77	25.28
TraesCS1A01G092900.1	Wheat	golgi, nucleus	18.77	25.28
TraesCS1B01G120600.1	Wheat	cytosol	18.77	25.28
GSMUA_Achr5P27000_001	Banana	cytosol	17.37	25.1
GSMUA_Achr3P23970_001	Banana	cytosol	19.05	22.37
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	19.05	22.08
Zm00001d008887_P002	Maize	cytosol	15.97	21.43
Zm00001d037876_P001	Maize	cytosol	16.25	21.4
GSMUA_Achr2P01640_001	Banana	cytosol	18.49	21.22
Zm00001d015817_P002	Maize	plastid	16.25	21.09
Zm00001d016333_P001	Maize	cytosol	15.69	20.0
Zm00001d004880_P001	Maize	cytosol	5.6	18.69
Zm00001d000121_P001	Maize	cytosol	5.6	18.35
Zm00001d030402_P001	Maize	cytosol, plastid	9.52	17.53
Zm00001d015857_P002	Maize	cytosol	6.16	17.46
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	15.97	17.38
Zm00001d019999_P001	Maize	cytosol	14.29	16.56
Zm00001d015887_P001	Maize	cytosol	6.72	16.0
Zm00001d045958_P001	Maize	cytosol	15.97	15.36
Zm00001d036129_P001	Maize	vacuole	16.81	14.85
Zm00001d045942_P001	Maize	cytosol	14.01	12.69
Zm00001d019111_P002	Maize	mitochondrion	10.36	12.63
Zm00001d042154_P021	Maize	plastid	14.85	11.18
Zm00001d046153_P001	Maize	plastid	8.68	9.81
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	17.93	8.14
Zm00001d001770_P002	Maize	plastid	8.4	7.61
Zm00001d010037_P001	Maize	mitochondrion	2.8	7.46
Zm00001d049253_P001	Maize	extracellular	4.48	7.41
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	3.36	7.32
Zm00001d045775_P001	Maize	cytosol	1.96	7.29
Zm00001d045627_P001	Maize	cytosol, plastid	3.36	6.67
Zm00001d010387_P001	Maize	plastid	3.36	6.63
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	1.4	5.88
Zm00001d031460_P001	Maize	cytosol	1.96	5.26
Zm00001d045876_P002	Maize	plasma membrane	3.08	5.12
Zm00001d021480_P001	Maize	plasma membrane	3.64	5.06
Zm00001d019803_P001	Maize	cytosol	3.36	4.98
Zm00001d031743_P001	Maize	cytosol	2.8	4.98
Zm00001d004587_P001	Maize	plastid	3.36	4.86
Zm00001d024029_P001	Maize	cytosol	1.4	4.39

Protein Annotations

Gene3D:1.10.8.60	Gene3D:2.40.50.740	MapMan:35.1	Gene3D:4.10.860.10	UniProt:A0A1D6LIV8	ProteinID:AQK79717.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR038237
InterPro:P-loop_NTPase	PFAM:PD002667	PFAM:PF00900	PANTHER:PTHR43572	PANTHER:PTHR43572:SF17	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	SUPFAM:SSF52540	UniParc:UPI00084279A9	EnsemblPlantsGene:Zm00001d035807	EnsemblPlants:Zm00001d035807_P001	EnsemblPlants:Zm00001d035807_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr6:+:51512969..51517185

Molecular Weight (calculated)

41002.7 Da

IEP (calculated)

8.370

GRAVY (calculated)

-0.264

Length

357 amino acids

Sequence
(BLAST)

001: MWEDSTGHIF GLFGRHLRRD IGPTPSQAST GILAWPLDVG RLSLPSTPPP LLATILRTLP LLSPRIYQLR LHRHLPTVLE LAGKDHCETC YKVPTVCILK
101: ISVHFEKDKA LARRFQPVLV NEPSQEDAVK ILLGLREKYE TYHKCKYTLE GINAAVYLSA RYIPDRYLPD KAIDLIDEAG SRAQMESFKR KKEEQCSILS
201: KSPDEYWQEI RAVQSTHEVA LANRLKYSLD ENDKEDVSRF QATILAFAVS TLIWQEYKKP GLEDIKEVEL FIWSWHLTRG FKLCKVRSVQ FGQKGIPYLN
301: TYDGCTICYP NPLIKANDTI KIDLETNKIM DFIKLDLSFH GLHQVIYLVR LNISTNS

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.