Factsheet for Zm00001d030502_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015481_P001	Maize	cytosol	48.57	67.33
Zm00001d035215_P001	Maize	cytosol	38.57	66.67
Zm00001d006068_P001	Maize	cytosol	51.43	56.69
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	46.43	56.03
Zm00001d005432_P003	Maize	cytosol, mitochondrion	52.86	54.41
Zm00001d037427_P001	Maize	extracellular	52.14	54.07
Zm00001d031575_P001	Maize	extracellular	55.0	53.1
Zm00001d033604_P001	Maize	mitochondrion	48.57	51.13
Zm00001d033737_P001	Maize	cytosol	30.71	48.86
Zm00001d053283_P002	Maize	cytosol	62.86	48.09
Zm00001d005247_P001	Maize	mitochondrion	48.57	47.55
Zm00001d004880_P001	Maize	cytosol	34.29	44.86
Zm00001d000121_P001	Maize	cytosol	34.29	44.04
Zm00001d009518_P001	Maize	cytosol	53.57	43.35
Zm00001d035647_P001	Maize	cytosol	42.14	40.69
Zm00001d015857_P002	Maize	cytosol	36.43	40.48
Zm00001d051261_P001	Maize	cytosol	58.57	39.81
Zm00001d019693_P001	Maize	cytosol, plastid	51.43	39.78
Zm00001d045775_P001	Maize	cytosol	26.43	38.54
Zm00001d009343_P001	Maize	mitochondrion	51.43	37.5
Zm00001d004105_P001	Maize	extracellular, plastid	50.71	36.79
Zm00001d036575_P001	Maize	mitochondrion	51.43	34.95
Zm00001d005030_P009	Maize	cytosol	28.57	32.79
Zm00001d015887_P001	Maize	cytosol	35.0	32.67
Zm00001d034790_P001	Maize	peroxisome	56.43	31.98
Zm00001d008887_P002	Maize	cytosol	60.0	31.58
Zm00001d024029_P001	Maize	cytosol	25.71	31.58
GSMUA_Achr11P...	Banana	cytosol	55.0	31.17
GSMUA_Achr5P27000_001	Banana	cytosol	55.0	31.17
EER90550	Sorghum	cytosol	57.86	30.68
Zm00001d012878_P001	Maize	plasma membrane	57.86	30.57
Zm00001d052602_P001	Maize	extracellular	28.57	30.53
Os02t0105900-01	Rice	nucleus	57.14	30.19
HORVU1Hr1G021720.1	Barley	cytosol	56.43	29.81
TraesCS1A01G092900.1	Wheat	golgi, nucleus	56.43	29.81
TraesCS1B01G120600.1	Wheat	cytosol	56.43	29.81
TraesCS1D01G101600.1	Wheat	cytosol	56.43	29.81
Zm00001d016333_P001	Maize	cytosol	59.29	29.64
Zm00001d010037_P001	Maize	mitochondrion	27.86	29.1
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	30.0	28.97
Zm00001d030402_P001	Maize	cytosol, plastid	40.0	28.87
Zm00001d019486_P001	Maize	cytosol	42.14	28.78
Zm00001d031460_P001	Maize	cytosol	27.14	28.57
Zm00001d037876_P001	Maize	cytosol	53.57	27.68
Zm00001d015817_P002	Maize	plastid	54.29	27.64
Zm00001d009287_P001	Maize	cytosol	25.71	26.67
GSMUA_Achr3P23970_001	Banana	cytosol	55.71	25.66
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	55.71	25.32
GSMUA_Achr2P01640_001	Banana	cytosol	55.71	25.08
Zm00001d045958_P001	Maize	cytosol	65.0	24.53
Zm00001d019999_P001	Maize	cytosol	53.57	24.35
Zm00001d045942_P001	Maize	cytosol	61.43	21.83
Zm00001d050845_P002	Maize	cytosol	29.29	20.81
Zm00001d042154_P021	Maize	plastid	65.0	19.2
Zm00001d031743_P001	Maize	cytosol	27.14	18.91
Zm00001d045627_P001	Maize	cytosol, plastid	24.29	18.89
Zm00001d046153_P001	Maize	plastid	41.43	18.35
Zm00001d045876_P002	Maize	plasma membrane	27.86	18.14
Zm00001d019803_P001	Maize	cytosol	25.71	14.94
Zm00001d021480_P001	Maize	plasma membrane	26.43	14.4
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	29.29	14.14
Zm00001d001770_P002	Maize	plastid	37.14	13.2
Zm00001d013036_P001	Maize	plastid	28.57	12.9
Zm00001d050009_P001	Maize	plastid	8.57	12.24
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	27.86	11.89
Zm00001d035807_P001	Maize	cytosol	27.14	10.64
Zm00001d036129_P001	Maize	vacuole	27.86	9.65
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	3.57	5.88
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	32.86	5.85
Zm00001d019111_P002	Maize	mitochondrion	11.43	5.46
Zm00001d004587_P001	Maize	plastid	9.29	5.26
Zm00001d049253_P001	Maize	extracellular	5.0	3.24
Zm00001d010387_P001	Maize	plastid	3.57	2.76
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	2.86	2.44

Protein Annotations

Gene3D:2.30.30.30	Gene3D:2.40.50.740	MapMan:35.1	UniProt:A0A1D6KCK5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR038237	ProteinID:ONM00998.1
PFAM:PD002667	PFAM:PF00900	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	UniParc:UPI000844E4E9	EnsemblPlantsGene:Zm00001d030502	EnsemblPlants:Zm00001d030502_P001	EnsemblPlants:Zm00001d030502_T001

Description

40S ribosomal protein S4-3

Coordinates

chr1:-:139699065..139701480

Molecular Weight (calculated)

16357.9 Da

IEP (calculated)

9.018

GRAVY (calculated)

-0.483

Length

140 amino acids

Sequence
(BLAST)

001: MDEDVIVKAV DCSNQSEVHM LMHATKVHYQ CPKRVKYPIY DQTVYLNDYH KKMLKDQYGI PYLNTYDGRT IRYPDPLIKA NDTIKIDLET NKIMDFIKFD
101: VGNMVTGGRN TRRVGVIKHR EKHKGSFETI HVLLGAFCYV

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.