Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 5
- extracellular 3
- endoplasmic reticulum 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033737_P001 | Maize | cytosol | 12.62 | 57.95 |
| Zm00001d015481_P001 | Maize | cytosol | 12.13 | 48.51 |
| Zm00001d050845_P002 | Maize | cytosol | 21.04 | 43.15 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 12.38 | 43.1 |
| Zm00001d035215_P001 | Maize | cytosol | 8.42 | 41.98 |
| Zm00001d005030_P009 | Maize | cytosol | 12.62 | 41.8 |
| Zm00001d052602_P001 | Maize | extracellular | 13.37 | 41.22 |
| Zm00001d006068_P001 | Maize | cytosol | 12.38 | 39.37 |
| Zm00001d037427_P001 | Maize | extracellular | 12.87 | 38.52 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 12.62 | 37.5 |
| Zm00001d035647_P001 | Maize | cytosol | 13.12 | 36.55 |
| Zm00001d005247_P001 | Maize | mitochondrion | 12.87 | 36.36 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 12.87 | 35.86 |
| Zm00001d031575_P001 | Maize | extracellular | 11.88 | 33.1 |
| Zm00001d033604_P001 | Maize | mitochondrion | 10.89 | 33.08 |
| Zm00001d009518_P001 | Maize | cytosol | 13.12 | 30.64 |
| Zm00001d009287_P001 | Maize | cytosol | 9.9 | 29.63 |
| Zm00001d053283_P002 | Maize | cytosol | 12.87 | 28.42 |
| Zm00001d030502_P001 | Maize | cytosol | 9.65 | 27.86 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 12.38 | 27.62 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 12.87 | 26.94 |
| Zm00001d019486_P001 | Maize | cytosol | 13.37 | 26.34 |
| Zm00001d051261_P001 | Maize | cytosol | 13.37 | 26.21 |
| Zm00001d036575_P001 | Maize | mitochondrion | 13.37 | 26.21 |
| Zm00001d009343_P001 | Maize | mitochondrion | 12.38 | 26.04 |
| Zm00001d050009_P001 | Maize | plastid | 5.69 | 23.47 |
| Zm00001d034790_P001 | Maize | peroxisome | 14.11 | 23.08 |
| GSMUA_Achr11P... | Banana | cytosol | 13.61 | 22.27 |
| EER90550 | Sorghum | cytosol | 14.36 | 21.97 |
| Zm00001d012878_P001 | Maize | plasma membrane | 14.36 | 21.89 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 14.11 | 21.51 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 14.11 | 21.51 |
| Os02t0105900-01 | Rice | nucleus | 14.11 | 21.51 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 14.11 | 21.51 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 14.11 | 21.51 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 13.12 | 21.46 |
| Zm00001d008887_P002 | Maize | cytosol | 14.11 | 21.43 |
| Zm00001d015817_P002 | Maize | plastid | 14.36 | 21.09 |
| Zm00001d037876_P001 | Maize | cytosol | 13.61 | 20.3 |
| Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 16.09 | 19.82 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 15.1 | 19.81 |
| Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 14.11 | 19.66 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 14.6 | 19.41 |
| Zm00001d000121_P001 | Maize | cytosol | 5.2 | 19.27 |
| Zm00001d013036_P001 | Maize | plastid | 14.6 | 19.03 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 14.6 | 18.97 |
| Zm00001d016333_P001 | Maize | cytosol | 13.12 | 18.93 |
| Zm00001d004880_P001 | Maize | cytosol | 4.46 | 16.82 |
| Zm00001d035807_P001 | Maize | cytosol | 14.85 | 16.81 |
| Zm00001d019999_P001 | Maize | cytosol | 11.88 | 15.58 |
| Zm00001d015887_P001 | Maize | cytosol | 5.45 | 14.67 |
| Zm00001d045958_P001 | Maize | cytosol | 13.37 | 14.56 |
| Zm00001d019111_P002 | Maize | mitochondrion | 10.4 | 14.33 |
| Zm00001d015857_P002 | Maize | cytosol | 4.21 | 13.49 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 5.94 | 12.37 |
| Zm00001d045942_P001 | Maize | cytosol | 11.88 | 12.18 |
| Zm00001d042154_P021 | Maize | plastid | 13.86 | 11.81 |
| Zm00001d046153_P001 | Maize | plastid | 7.18 | 9.18 |
| Zm00001d031743_P001 | Maize | cytosol | 4.21 | 8.46 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 1.49 | 7.06 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 13.37 | 6.87 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 2.72 | 6.71 |
| Zm00001d049253_P001 | Maize | extracellular | 3.47 | 6.48 |
| Zm00001d024029_P001 | Maize | cytosol | 1.73 | 6.14 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 2.48 | 5.56 |
| Zm00001d031460_P001 | Maize | cytosol | 1.73 | 5.26 |
| Zm00001d010037_P001 | Maize | mitochondrion | 1.73 | 5.22 |
| Zm00001d001770_P002 | Maize | plastid | 4.95 | 5.08 |
| Zm00001d021480_P001 | Maize | plasma membrane | 3.22 | 5.06 |
| Zm00001d010387_P001 | Maize | plastid | 2.23 | 4.97 |
| Zm00001d045876_P002 | Maize | plasma membrane | 2.48 | 4.65 |
| Zm00001d004587_P001 | Maize | plastid | 2.72 | 4.45 |
| Zm00001d019803_P001 | Maize | cytosol | 2.48 | 4.15 |
| Zm00001d045775_P001 | Maize | cytosol | 0.74 | 3.12 |
Protein Annotations
| Gene3D:2.40.50.740 | MapMan:35.1 | UniProt:A0A1D6LKT8 | ProteinID:AQK80320.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR038237 | PFAM:PD002667 | PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Ribosomal_S4e |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | SignalP:SignalP-noTM | UniParc:UPI000845766D | EnsemblPlantsGene:Zm00001d036129 | EnsemblPlants:Zm00001d036129_P001 |
| EnsemblPlants:Zm00001d036129_T001 | SEG:seg | : | : | : | : |
Description
40S ribosomal protein S4-3
Coordinates
chr6:+:73780322..73784110
Molecular Weight (calculated)
45235.7 Da
IEP (calculated)
8.647
GRAVY (calculated)
-0.236
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFFLVPAPA LCPLLAHLHG LAEADLAASG SQFCSPPPLS FQDMCCHRRC RWRRPSMQPR RGRATRRCWP ELHKVSLLEQ RTTVKALQQH LVLALHYFFP
101: IFYKIKITVI GDGDMVQQKL EEVDQDRCRI IPSLSYGPMG IRNKQKCCKL EIRQALLPLP GDAKSQPALA TTTQVAATQT TAPAEDATVE ATTESDPAMP
201: TPLSPYTNYP DLKPPSTPMP PSVESEVETK AGSTMTEGPA VVNSAPIADA STGSSPVNTR PRPQSPYPNV SVNLKLLSHL HKNTVCIRLC SSFFDLYAVS
301: RFQATILAFA VSTLIWQEYK KPGLEDIKEV ELFIWSRHLT RGFKLCKVRS VQFGQKGIPY LNTYDDHTIR YPDPLIKAND TIKIDLETNK IMDLFKLDVA
401: TWSW
101: IFYKIKITVI GDGDMVQQKL EEVDQDRCRI IPSLSYGPMG IRNKQKCCKL EIRQALLPLP GDAKSQPALA TTTQVAATQT TAPAEDATVE ATTESDPAMP
201: TPLSPYTNYP DLKPPSTPMP PSVESEVETK AGSTMTEGPA VVNSAPIADA STGSSPVNTR PRPQSPYPNV SVNLKLLSHL HKNTVCIRLC SSFFDLYAVS
301: RFQATILAFA VSTLIWQEYK KPGLEDIKEV ELFIWSRHLT RGFKLCKVRS VQFGQKGIPY LNTYDDHTIR YPDPLIKAND TIKIDLETNK IMDLFKLDVA
401: TWSW
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.