Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024029_P001 | Maize | cytosol | 40.3 | 71.05 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 46.27 | 51.67 |
| Zm00001d010037_P001 | Maize | mitochondrion | 30.35 | 45.52 |
| Zm00001d045876_P002 | Maize | plasma membrane | 41.29 | 38.6 |
| Zm00001d005247_P001 | Maize | mitochondrion | 26.37 | 37.06 |
| Zm00001d033604_P001 | Maize | mitochondrion | 24.38 | 36.84 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 24.88 | 36.76 |
| Zm00001d000121_P001 | Maize | cytosol | 19.9 | 36.7 |
| Zm00001d009518_P001 | Maize | cytosol | 31.34 | 36.42 |
| Zm00001d004880_P001 | Maize | cytosol | 18.91 | 35.51 |
| Zm00001d015481_P001 | Maize | cytosol | 17.41 | 34.65 |
| Zm00001d045775_P001 | Maize | cytosol | 16.42 | 34.38 |
| Zm00001d015857_P002 | Maize | cytosol | 21.39 | 34.13 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 18.91 | 32.76 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 30.85 | 31.96 |
| Zm00001d021480_P001 | Maize | plasma membrane | 40.8 | 31.91 |
| Zm00001d036575_P001 | Maize | mitochondrion | 32.34 | 31.55 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 28.36 | 31.49 |
| Zm00001d031575_P001 | Maize | extracellular | 22.39 | 31.03 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 29.35 | 30.57 |
| Zm00001d019803_P001 | Maize | cytosol | 36.32 | 30.29 |
| Zm00001d006068_P001 | Maize | cytosol | 18.91 | 29.92 |
| Zm00001d035215_P001 | Maize | cytosol | 11.94 | 29.63 |
| Zm00001d037427_P001 | Maize | extracellular | 19.9 | 29.63 |
| Zm00001d034790_P001 | Maize | peroxisome | 34.83 | 28.34 |
| EER90550 | Sorghum | cytosol | 36.32 | 27.65 |
| Zm00001d012878_P001 | Maize | plasma membrane | 36.32 | 27.55 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 33.83 | 27.53 |
| Zm00001d030502_P001 | Maize | cytosol | 18.91 | 27.14 |
| GSMUA_Achr11P... | Banana | cytosol | 33.33 | 27.13 |
| Zm00001d053283_P002 | Maize | cytosol | 24.38 | 26.78 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 34.83 | 26.42 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 34.83 | 26.42 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 34.83 | 26.42 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 34.83 | 26.42 |
| Zm00001d031460_P001 | Maize | cytosol | 17.41 | 26.32 |
| Os02t0105900-01 | Rice | nucleus | 34.33 | 26.04 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 35.82 | 23.68 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 35.82 | 23.38 |
| Zm00001d015887_P001 | Maize | cytosol | 17.41 | 23.33 |
| Zm00001d051261_P001 | Maize | cytosol | 23.88 | 23.3 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 35.82 | 23.15 |
| Zm00001d035647_P001 | Maize | cytosol | 16.42 | 22.76 |
| Zm00001d037876_P001 | Maize | cytosol | 29.85 | 22.14 |
| Zm00001d009343_P001 | Maize | mitochondrion | 20.9 | 21.88 |
| Zm00001d015817_P002 | Maize | plastid | 28.86 | 21.09 |
| Zm00001d019999_P001 | Maize | cytosol | 30.35 | 19.81 |
| Zm00001d008887_P002 | Maize | cytosol | 24.88 | 18.8 |
| Zm00001d016333_P001 | Maize | cytosol | 24.38 | 17.5 |
| Zm00001d019486_P001 | Maize | cytosol | 16.92 | 16.59 |
| Zm00001d050009_P001 | Maize | plastid | 7.96 | 16.33 |
| Zm00001d045958_P001 | Maize | cytosol | 26.87 | 14.56 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 5.97 | 14.12 |
| Zm00001d046153_P001 | Maize | plastid | 20.4 | 12.97 |
| Zm00001d045942_P001 | Maize | cytosol | 24.38 | 12.44 |
| Zm00001d042154_P021 | Maize | plastid | 25.87 | 10.97 |
| Zm00001d001770_P002 | Maize | plastid | 18.91 | 9.64 |
| Zm00001d052602_P001 | Maize | extracellular | 5.47 | 8.4 |
| Zm00001d033737_P001 | Maize | cytosol | 2.99 | 6.82 |
| Zm00001d004587_P001 | Maize | plastid | 7.46 | 6.07 |
| Zm00001d005030_P009 | Maize | cytosol | 3.48 | 5.74 |
| Zm00001d050845_P002 | Maize | cytosol | 5.47 | 5.58 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 3.98 | 5.52 |
| Zm00001d036129_P001 | Maize | vacuole | 8.46 | 4.21 |
| Zm00001d009287_P001 | Maize | cytosol | 2.49 | 3.7 |
| Zm00001d013036_P001 | Maize | plastid | 4.48 | 2.9 |
| Zm00001d035807_P001 | Maize | cytosol | 4.98 | 2.8 |
| Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 2.99 | 2.07 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 6.47 | 1.65 |
| Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 2.49 | 1.52 |
| Zm00001d019111_P002 | Maize | mitochondrion | 1.99 | 1.37 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 1.0 | 1.22 |
| Zm00001d010387_P001 | Maize | plastid | 1.0 | 1.1 |
| Zm00001d049253_P001 | Maize | extracellular | 1.0 | 0.93 |
Protein Annotations
| Gene3D:2.30.30.30 | Gene3D:2.60.120.650 | MapMan:35.2 | UniProt:A0A1D6KL47 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019538 | InterPro:IPR014722 | InterPro:KOW | ProteinID:ONM03614.1 | PFAM:PD002667 |
| PFAM:PF00467 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_central_region |
| TMHMM:TMhelix | UniParc:UPI0008448E08 | EnsemblPlantsGene:Zm00001d031743 | EnsemblPlants:Zm00001d031743_P001 | EnsemblPlants:Zm00001d031743_T001 | SEG:seg |
Description
40S ribosomal protein S4-3
Coordinates
chr1:+:200572724..200575450
Molecular Weight (calculated)
22457.5 Da
IEP (calculated)
8.649
GRAVY (calculated)
-0.141
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MRFQVHTAGV ASLQADSYSK MGRLTGCEDC DATGFGDLGR KEKTIPDALQ PELGKGLLIA HGSHQELGKG DSMTNLMINM CDVLIPYMNL QRHVLVDGKV
101: RTDKTYPAGC HFHSLRQTRT TCCFRLHPIR DEDAKFKLCN GRSIQFDVGN VVMVTGGRNT GRVGVIKNWE KHKGIFEVID VLLGVFCMLC LVFSYLLYRK
201: T
101: RTDKTYPAGC HFHSLRQTRT TCCFRLHPIR DEDAKFKLCN GRSIQFDVGN VVMVTGGRNT GRVGVIKNWE KHKGIFEVID VLLGVFCMLC LVFSYLLYRK
201: T
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.