Factsheet for Zm00001d034790_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045775_P001	Maize	cytosol	36.44	93.75
Zm00001d012878_P001	Maize	plasma membrane	96.36	89.81
EER90550	Sorghum	cytosol	95.95	89.77
GSMUA_Achr11P...	Banana	cytosol	89.07	89.07
GSMUA_Achr5P27000_001	Banana	cytosol	87.85	87.85
Os02t0105900-01	Rice	nucleus	93.52	87.17
HORVU1Hr1G021720.1	Barley	cytosol	91.5	85.28
TraesCS1A01G092900.1	Wheat	golgi, nucleus	91.5	85.28
TraesCS1B01G120600.1	Wheat	cytosol	91.5	85.28
TraesCS1D01G101600.1	Wheat	cytosol	91.5	85.28
Zm00001d015481_P001	Maize	cytosol	34.41	84.16
Zm00001d019693_P001	Maize	cytosol, plastid	59.92	81.77
Zm00001d035215_P001	Maize	cytosol	24.7	75.31
Zm00001d004105_P001	Maize	extracellular, plastid	57.89	74.09
Zm00001d037427_P001	Maize	extracellular	39.68	72.59
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	33.6	71.55
GSMUA_Achr3P23970_001	Banana	cytosol	87.85	71.38
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	88.26	70.78
Zm00001d005432_P003	Maize	cytosol, mitochondrion	38.46	69.85
GSMUA_Achr2P01640_001	Banana	cytosol	87.85	69.77
Zm00001d005247_P001	Maize	mitochondrion	39.68	68.53
Zm00001d006068_P001	Maize	cytosol	35.22	68.5
Zm00001d033604_P001	Maize	mitochondrion	36.03	66.92
Zm00001d050009_P001	Maize	plastid	25.91	65.31
Zm00001d031575_P001	Maize	extracellular	37.65	64.14
Zm00001d033737_P001	Maize	cytosol	22.67	63.64
Zm00001d030402_P001	Maize	cytosol, plastid	48.99	62.37
Zm00001d031460_P001	Maize	cytosol	32.39	60.15
Zm00001d000121_P001	Maize	cytosol	26.32	59.63
Zm00001d035647_P001	Maize	cytosol	34.82	59.31
Zm00001d009518_P001	Maize	cytosol	39.68	56.65
Zm00001d030502_P001	Maize	cytosol	31.98	56.43
Zm00001d004880_P001	Maize	cytosol	23.08	53.27
Zm00001d015857_P002	Maize	cytosol	27.13	53.17
Zm00001d053283_P002	Maize	cytosol	38.06	51.37
Zm00001d037876_P001	Maize	cytosol	56.28	51.29
Zm00001d024029_P001	Maize	cytosol	23.48	50.88
Zm00001d052602_P001	Maize	extracellular	26.32	49.62
Zm00001d009343_P001	Maize	mitochondrion	38.06	48.96
Zm00001d019999_P001	Maize	cytosol	58.3	46.75
Zm00001d051261_P001	Maize	cytosol	38.87	46.6
Zm00001d036575_P001	Maize	mitochondrion	37.65	45.15
Zm00001d005030_P009	Maize	cytosol	22.27	45.08
Zm00001d015887_P001	Maize	cytosol	25.91	42.67
Zm00001d019486_P001	Maize	cytosol	34.82	41.95
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	22.67	38.62
Zm00001d008887_P002	Maize	cytosol	41.3	38.35
Zm00001d015817_P002	Maize	plastid	39.27	35.27
Zm00001d031743_P001	Maize	cytosol	28.34	34.83
Zm00001d016333_P001	Maize	cytosol	38.46	33.93
Zm00001d045627_P001	Maize	cytosol, plastid	24.7	33.89
Zm00001d009287_P001	Maize	cytosol	17.41	31.85
Zm00001d050845_P002	Maize	cytosol	25.1	31.47
Zm00001d010037_P001	Maize	mitochondrion	17.0	31.34
Zm00001d045876_P002	Maize	plasma membrane	24.7	28.37
Zm00001d045958_P001	Maize	cytosol	40.89	27.22
Zm00001d021480_P001	Maize	plasma membrane	26.32	25.29
Zm00001d019803_P001	Maize	cytosol	24.29	24.9
Zm00001d045942_P001	Maize	cytosol	37.65	23.6
Zm00001d046153_P001	Maize	plastid	29.55	23.1
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	24.7	21.03
Zm00001d042154_P021	Maize	plastid	37.65	19.62
Zm00001d013036_P001	Maize	plastid	24.29	19.35
Zm00001d035807_P001	Maize	cytosol	27.13	18.77
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.07	17.65
Zm00001d001770_P002	Maize	plastid	26.32	16.5
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	21.86	16.46
Zm00001d036129_P001	Maize	vacuole	23.08	14.11
Zm00001d004587_P001	Maize	plastid	12.55	12.55
Zm00001d019111_P002	Maize	mitochondrion	11.34	9.56
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	5.67	8.54
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	26.32	8.27
Zm00001d010387_P001	Maize	plastid	4.86	6.63
Zm00001d049253_P001	Maize	extracellular	4.86	5.56

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	UniProt:A0A1D6LBD6
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485
ProteinID:ONM11412.1	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071
PFAM:PF16121	PIRSF:PIRSF002116	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI000844471D
EnsemblPlantsGene:Zm00001d034790	EnsemblPlants:Zm00001d034790_P001	EnsemblPlants:Zm00001d034790_T001	SEG:seg	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr1:-:302359166..302360795

Molecular Weight (calculated)

28006.4 Da

IEP (calculated)

10.658

GRAVY (calculated)

-0.424

Length

247 amino acids

Sequence
(BLAST)

001: MLDKLGGAFA PKPSSGPHKS RECLPLILII RNRLKYALNY REVISILMQR HVLVDGKVRT DKTYPAGFMD VISIPKTMEN YRLLYDTKGR FRLHPIRDED
101: AKFKLCKVRS VQFGQKGIPY LNTYDGRTIR YPDPLIKAND TIKIDLETNK IMDFIKFDVG NVVMVTGGRN TGRVGVIKNR EKHKGGFDTI HVEDSMGHQF
201: ATRMGNVFTI GKGNKPWVSL PKGKGIKLSI IEEQRRRDFA AQAAAKA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.