Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G58420.1 | Thale cress | mitochondrion | 99.62 | 99.62 |
| AT2G17360.1 | Thale cress | mitochondrion | 98.86 | 99.23 |
| Bra028708.1-P | Field mustard | cytosol | 96.95 | 96.95 |
| CDX91445 | Canola | cytosol | 58.4 | 94.44 |
| CDX70008 | Canola | cytosol | 95.42 | 92.94 |
| Solyc06g007360.2.1 | Tomato | plastid | 92.75 | 92.05 |
| KRH73264 | Soybean | endoplasmic reticulum | 92.37 | 91.67 |
| KRH69777 | Soybean | endoplasmic reticulum | 91.98 | 91.29 |
| KRH14914 | Soybean | nucleus | 91.98 | 91.29 |
| KRH08064 | Soybean | nucleus | 91.98 | 91.29 |
| VIT_13s0067g01820.t01 | Wine grape | cytosol | 85.11 | 90.65 |
| KRH65626 | Soybean | nucleus | 91.22 | 90.53 |
| KRH76010 | Soybean | endoplasmic reticulum | 91.22 | 90.53 |
| Solyc02g070360.2.1 | Tomato | nucleus | 90.08 | 89.39 |
| EER90550 | Sorghum | cytosol | 90.08 | 89.39 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 90.08 | 89.39 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 90.08 | 89.39 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 90.08 | 89.39 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 90.08 | 89.39 |
| CDX81032 | Canola | extracellular | 95.04 | 89.25 |
| CDY58877 | Canola | cytosol | 95.04 | 89.25 |
| GSMUA_Achr11P... | Banana | cytosol | 83.97 | 89.07 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 83.97 | 89.07 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 89.69 | 89.02 |
| Bra005923.1-P | Field mustard | cytosol | 94.66 | 88.89 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 89.69 | 88.68 |
| Os02t0105900-01 | Rice | nucleus | 89.31 | 88.3 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 88.93 | 87.92 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 88.93 | 87.92 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 88.93 | 87.92 |
| EES00734 | Sorghum | cytosol | 88.93 | 87.92 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 88.93 | 87.92 |
| CDX99006 | Canola | extracellular | 95.8 | 87.15 |
| EES18108 | Sorghum | cytosol | 87.4 | 87.07 |
| CDY14056 | Canola | cytosol | 96.56 | 86.94 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 82.82 | 86.8 |
| Os05t0368300-01 | Rice | nucleus | 87.02 | 86.69 |
| VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 90.08 | 83.69 |
| CDX91447 | Canola | cytosol, mitochondrion | 15.65 | 83.67 |
| VIT_00s0252g00080.t01 | Wine grape | nucleus | 34.73 | 83.49 |
| CDY05015 | Canola | cytosol | 96.56 | 82.95 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 78.63 | 81.75 |
| PGSC0003DMT400052955 | Potato | cytosol | 57.63 | 81.18 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 91.98 | 79.28 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 92.75 | 78.9 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 90.84 | 78.81 |
| VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 26.34 | 76.67 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 90.08 | 75.88 |
| KXG32490 | Sorghum | cytosol | 38.55 | 72.66 |
| Zm00001d050009_P001 | Maize | plastid | 24.05 | 64.29 |
| KRH04718 | Soybean | cytosol | 46.56 | 63.54 |
| CDY54450 | Canola | cytosol | 29.01 | 62.3 |
| Bra005118.1-P | Field mustard | cytosol | 29.01 | 62.3 |
| KRH04720 | Soybean | cytosol, endoplasmic reticulum | 48.09 | 61.76 |
| CDY52257 | Canola | cytosol, mitochondrion | 9.16 | 58.54 |
| Bra033109.1-P | Field mustard | cytosol | 18.32 | 41.03 |
| CDY68858 | Canola | cytosol | 18.32 | 41.03 |
| Zm00001d010037_P001 | Maize | mitochondrion | 17.18 | 33.58 |
| CDY04355 | Canola | cytosol | 24.43 | 32.65 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 5.73 | 17.65 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 7.25 | 11.59 |
| Zm00001d010387_P001 | Maize | plastid | 7.25 | 10.5 |
| Zm00001d049253_P001 | Maize | extracellular | 4.96 | 6.02 |
Protein Annotations
| MapMan:17.1.3.1.5 | Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | InterPro:40S_S4_C | EntrezGene:830600 |
| UniProt:A0A178UFG0 | ProteinID:AED91107.1 | ArrayExpress:AT5G07090 | EnsemblPlantsGene:AT5G07090 | RefSeq:AT5G07090 | TAIR:AT5G07090 |
| RefSeq:AT5G07090-TAIR-G | EnsemblPlants:AT5G07090.1 | TAIR:AT5G07090.1 | EMBL:AY050933 | EMBL:AY070769 | EMBL:AY079417 |
| EMBL:AY085205 | EMBL:AY093715 | Unigene:At.5040 | ProteinID:BAB11167.1 | ProteinID:CAB87265.1 | ncoils:Coil |
| EMBL:F20029 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 |
| GO:GO:0019843 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR002942 | InterPro:IPR014722 |
| InterPro:IPR038237 | InterPro:KOW | HAMAP:MF_00485 | RefSeq:NP_568179.1 | ProteinID:OAO92435.1 | UniProt:P49204 |
| PFAM:PD002667 | PFAM:PF00467 | PFAM:PF00900 | PFAM:PF01479 | PFAM:PF08071 | PFAM:PF16121 |
| PIRSF:PIRSF002116 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006339 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00528 | PFscan:PS50889 | PANTHER:PTHR11581 |
| PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS | InterPro:Ribosomal_S4e_central_region |
| InterPro:Ribosomal_S4e_central_sf | InterPro:S4_RNA-bd | SMART:SM00739 | UniParc:UPI0000000FAD | EMBL:Z17994 | EMBL:Z18498 |
| EMBL:Z32618 | EMBL:Z32619 | SEG:seg | : | : | : |
Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
Coordinates
chr5:+:2202364..2204150
Molecular Weight (calculated)
29875.7 Da
IEP (calculated)
10.845
GRAVY (calculated)
-0.517
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.