CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76010	Soybean	endoplasmic reticulum	99.62	99.62
KRH08064	Soybean	nucleus	95.83	95.83
KRH73264	Soybean	endoplasmic reticulum	95.45	95.45
KRH69777	Soybean	endoplasmic reticulum	95.45	95.45
KRH14914	Soybean	nucleus	95.08	95.08
GSMUA_Achr5P27000_001	Banana	cytosol	87.88	93.93
GSMUA_Achr11P...	Banana	cytosol	87.88	93.93
Solyc06g007360.2.1	Tomato	plastid	93.18	93.18
AT2G17360.1	Thale cress	mitochondrion	90.53	91.57
AT5G07090.1	Thale cress	mitochondrion	90.53	91.22
AT5G58420.1	Thale cress	mitochondrion	90.53	91.22
EER90550	Sorghum	cytosol	90.53	90.53
Solyc02g070360.2.1	Tomato	nucleus	90.53	90.53
Solyc02g070350.2.1	Tomato	nucleus, unclear	90.53	90.53
Solyc02g070340.2.1	Tomato	mitochondrion	90.53	90.53
Solyc02g070330.2.1	Tomato	mitochondrion	90.53	90.53
Bra028708.1-P	Field mustard	cytosol	89.77	90.46
EES00734	Sorghum	cytosol	90.53	90.19
PGSC0003DMT400054543	Potato	mitochondrion	90.15	90.15
Solyc02g070320.2.1	Tomato	nucleus, unclear	90.15	90.15
Os01t0358400-01	Rice	nucleus, plasma membrane	89.77	89.43
Os02t0105900-01	Rice	nucleus	89.39	89.06
EES18108	Sorghum	cytosol	88.26	88.59
TraesCS1A01G092900.1	Wheat	golgi, nucleus	88.64	88.3
HORVU1Hr1G021720.1	Barley	cytosol	88.64	88.3
TraesCS1B01G120600.1	Wheat	cytosol	88.64	88.3
TraesCS1D01G101600.1	Wheat	cytosol	88.64	88.3
Os05t0368300-01	Rice	nucleus	87.88	88.21
Solyc04g016350.1.1	Tomato	nucleus, unclear	82.95	87.6
Bra005923.1-P	Field mustard	cytosol	89.02	84.23
PGSC0003DMT400052955	Potato	cytosol	58.71	83.33
TraesCS1A01G232700.1	Wheat	cytosol	78.03	81.75
GSMUA_Achr3P23970_001	Banana	cytosol	93.56	81.25
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	27.65	81.11
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	93.56	80.19
GSMUA_Achr2P01640_001	Banana	cytosol	93.94	79.74
Bra020369.1-P	Field mustard	cytosol	88.26	77.41
KXG32490	Sorghum	cytosol	40.15	76.26
KRH04718	Soybean	cytosol	46.97	64.58
KRH04720	Soybean	cytosol, endoplasmic reticulum	48.48	62.75
Bra005118.1-P	Field mustard	cytosol	26.14	56.56
Bra033109.1-P	Field mustard	cytosol	17.8	40.17
Zm00001d010037_P001	Maize	mitochondrion	17.42	34.33
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.06	18.82
CDY00352	Canola	cytosol	7.95	16.15
CDY42359	Canola	cytosol	7.58	16.13
CDY71580	Canola	cytosol	6.82	15.25
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.95	12.8
CDY36197	Canola	cytosol	5.68	11.63
Zm00001d010387_P001	Maize	plastid	7.58	11.05
Zm00001d049253_P001	Maize	extracellular	5.68	6.94

Protein Annotations

EntrezGene:100500000	MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C
EMBL:ACUP02001441	EnsemblPlantsGene:GLYMA_03G050300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529	UniProt:I1JL82
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	EnsemblPlants:KRH65626	ProteinID:KRH65626
ProteinID:KRH65626.1	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479
PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581
PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	UniParc:UPI00023BD28A	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:6559687..6562374

Molecular Weight (calculated)

29992.9 Da

IEP (calculated)

10.935

GRAVY (calculated)

-0.450

Length

264 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILILRN RLKYALTYRE VIAILMQRHV LVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSVRDEESK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KLDLESNKIT DFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHV QDATGHEFAT RMGNVFIIGK GTKPWVSLPK GKGIKLSIIE EARKRLAAQK ETVA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.