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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 2
  • nucleus 1
  • mitochondrion 3
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:mitochondrion
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH08064 Soybean nucleus 99.62 99.62
KRH69777 Soybean endoplasmic reticulum 99.24 99.24
KRH14914 Soybean nucleus 98.48 98.48
KRH76010 Soybean endoplasmic reticulum 95.45 95.45
KRH65626 Soybean nucleus 95.45 95.45
GSMUA_Achr5P27000_001 Banana cytosol 87.88 93.93
GSMUA_Achr11P... Banana cytosol 87.88 93.93
AT2G17360.1 Thale cress mitochondrion 91.67 92.72
Solyc06g007360.2.1 Tomato plastid 92.42 92.42
AT5G07090.1 Thale cress mitochondrion 91.67 92.37
EER90550 Sorghum cytosol 92.05 92.05
AT5G58420.1 Thale cress mitochondrion 91.29 91.98
Bra028708.1-P Field mustard cytosol 90.91 91.6
Solyc02g070360.2.1 Tomato nucleus 91.29 91.29
EES00734 Sorghum cytosol 91.29 90.94
Solyc02g070350.2.1 Tomato nucleus, unclear 90.91 90.91
Solyc02g070340.2.1 Tomato mitochondrion 90.91 90.91
Solyc02g070330.2.1 Tomato mitochondrion 90.91 90.91
Solyc02g070320.2.1 Tomato nucleus, unclear 90.53 90.53
PGSC0003DMT400054543 Potato mitochondrion 90.53 90.53
EES18108 Sorghum cytosol 90.15 90.49
Os01t0358400-01 Rice nucleus, plasma membrane 90.53 90.19
Os02t0105900-01 Rice nucleus 90.15 89.81
TraesCS1D01G101600.1 Wheat cytosol 89.39 89.06
TraesCS1B01G120600.1 Wheat cytosol 89.39 89.06
HORVU1Hr1G021720.1 Barley cytosol 89.39 89.06
TraesCS1A01G092900.1 Wheat golgi, nucleus 89.39 89.06
Os05t0368300-01 Rice nucleus 88.26 88.59
Solyc04g016350.1.1 Tomato nucleus, unclear 83.33 88.0
Bra005923.1-P Field mustard cytosol 90.15 85.3
PGSC0003DMT400052955 Potato cytosol 58.33 82.8
TraesCS1A01G232700.1 Wheat cytosol 78.79 82.54
GSMUA_Achr3P23970_001 Banana cytosol 93.56 81.25
GSMUA_Achr3P00760_001 Banana cytosol, plasma membrane 94.32 80.84
GSMUA_Achr2P01640_001 Banana cytosol 93.18 79.1
Bra020369.1-P Field mustard cytosol 87.88 77.08
KXG32490 Sorghum cytosol 40.15 76.26
KRH04718 Soybean cytosol 48.11 66.15
KRH04720 Soybean cytosol, endoplasmic reticulum 50.38 65.2
Bra005118.1-P Field mustard cytosol 26.89 58.2
Bra033109.1-P Field mustard cytosol 17.8 40.17
Protein Annotations
MapMan:17.1.3.1.5Gene3D:2.30.30.30Gene3D:2.40.50.740Gene3D:3.10.290.40InterPro:40S_S4_CEntrezGene:547645
EMBL:ACUP02001273EMBL:AF528526EMBL:BT097071EnsemblPlantsGene:GLYMA_02G263200GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0019843GO:GO:0022627
GO:GO:0030529InterPro:IPR002942InterPro:IPR014722InterPro:IPR038237InterPro:KOWEnsemblPlants:KRH73264
ProteinID:KRH73264ProteinID:KRH73264.1HAMAP:MF_00485PFAM:PD002667PFAM:PF00467PFAM:PF00900
PFAM:PF01479PFAM:PF08071PFAM:PF16121PIRSF:PIRSF002116ScanProsite:PS00528PFscan:PS50889
PANTHER:PTHR11581PANTHER:PTHR11581:SF11UniProt:Q8LJW0InterPro:Rib_L2_dom2InterPro:Ribosomal_S4eInterPro:Ribosomal_S4e_N
InterPro:Ribosomal_S4e_N_CSInterPro:Ribosomal_S4e_central_regionInterPro:Ribosomal_S4e_central_sfInterPro:S4_RNA-bdSMART:SM00363SMART:SM00739
UniParc:UPI000009C5E3SEG:seg::::
Description
hypothetical protein
Coordinates
chr2:-:44888097..44890653
Molecular Weight (calculated)
29962.8 Da
IEP (calculated)
10.942
GRAVY (calculated)
-0.448
Length
264 amino acids
Sequence
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILILRN RLKYALTYRE VIAILMQRHV LVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSVRDDEAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIRANDTI KLDLEENKIV DFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHV QDSTGHEFAT RMGNVFTIGK GTKPWISLPK GKGIKLSIIE EARKRIAAQQ ATAA
Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.