Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66710 | Canola | plastid | 52.25 | 68.02 |
| Bra021838.1-P | Field mustard | plastid | 61.94 | 65.81 |
| AT2G33270.1 | Thale cress | plastid | 55.36 | 58.61 |
| CDX80647 | Canola | plastid | 25.26 | 53.28 |
| HORVU2Hr1G017310.1 | Barley | cytosol | 37.72 | 52.66 |
| PGSC0003DMT400060823 | Potato | mitochondrion | 40.83 | 51.3 |
| Solyc10g080730.1.1 | Tomato | plastid | 44.98 | 50.58 |
| CDY06319 | Canola | plastid | 42.56 | 47.13 |
| CDY22676 | Canola | plastid | 43.25 | 46.47 |
| CDX95049 | Canola | plastid | 42.56 | 45.9 |
| GSMUA_Achr5P07610_001 | Banana | mitochondrion | 30.1 | 45.55 |
| KRH06734 | Soybean | plastid | 46.71 | 45.15 |
| GSMUA_Achr8P21480_001 | Banana | plastid | 41.52 | 45.11 |
| KRG94786 | Soybean | plastid | 45.33 | 44.11 |
| CDX93552 | Canola | plastid | 41.18 | 43.75 |
| Os07t0684100-01 | Rice | plastid | 42.21 | 43.73 |
| PGSC0003DMT400048452 | Potato | plastid | 44.98 | 43.19 |
| GSMUA_Achr6P32280_001 | Banana | plastid | 40.48 | 43.01 |
| GSMUA_Achr9P04970_001 | Banana | plastid | 41.18 | 42.81 |
| EER92835 | Sorghum | plastid | 38.75 | 42.11 |
| TraesCS4A01G130400.1 | Wheat | plastid | 40.14 | 42.03 |
| TraesCS4D01G176100.1 | Wheat | plastid | 40.14 | 42.03 |
| TraesCS2B01G118100.1 | Wheat | plastid | 39.45 | 41.76 |
| VIT_08s0007g07620.t01 | Wine grape | plastid | 44.64 | 41.75 |
| HORVU4Hr1G051400.3 | Barley | plastid | 39.79 | 41.67 |
| TraesCS2A01G100900.1 | Wheat | plastid | 39.1 | 41.39 |
| TraesCS4B01G174100.1 | Wheat | plastid | 39.45 | 41.3 |
| Zm00001d022518_P002 | Maize | plastid | 38.75 | 41.18 |
| Solyc12g019740.1.1 | Tomato | plastid | 42.56 | 41.14 |
| TraesCS2D01G100500.1 | Wheat | plastid | 38.41 | 40.81 |
| KXG36973 | Sorghum | plastid | 39.45 | 40.71 |
| KXG39469 | Sorghum | plastid | 39.79 | 40.64 |
| Zm00001d047555_P001 | Maize | plastid | 39.45 | 40.57 |
| Zm00001d028992_P001 | Maize | plastid | 39.45 | 40.14 |
| Os03t0326500-01 | Rice | mitochondrion | 15.22 | 40.0 |
| CDY56937 | Canola | plastid | 35.64 | 39.46 |
| CDY02147 | Canola | plastid | 35.64 | 39.31 |
| CDX89357 | Canola | plastid | 25.26 | 33.8 |
| CDX90776 | Canola | plastid | 24.22 | 32.41 |
| CDY65919 | Canola | endoplasmic reticulum, golgi, plastid | 29.76 | 31.85 |
| CDX94364 | Canola | plastid | 23.18 | 30.88 |
| CDY43516 | Canola | plastid | 23.53 | 28.1 |
| CDY54277 | Canola | plastid | 23.53 | 27.98 |
| CDY30208 | Canola | plastid | 22.84 | 27.5 |
Protein Annotations
| MapMan:10.5.7 | Gene3D:3.40.30.10 | GO:A0A078HLK6 | UniProt:A0A078HLK6 | EnsemblPlants:CDY37738 | ProteinID:CDY37738 |
| ProteinID:CDY37738.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00064640001 | InterPro:IPR013766 | PFAM:PF00085 | PFscan:PS51352 | PANTHER:PTHR43601 |
| PANTHER:PTHR43601:SF9 | SUPFAM:SSF52833 | SignalP:SignalP-noTM | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI0004EDCA57 |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g19300DBnaA04g19300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLK6]
Coordinates
chrLK032406:-:279696..281685
Molecular Weight (calculated)
32770.6 Da
IEP (calculated)
8.649
GRAVY (calculated)
-0.388
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MTCFLWNTAI LFLCEFMATD TFIKLNPIFI NPNRFNLREC SNRSPKSISS LSCISPRLIS CSHVNPRTMI YGENDNNILF PKKKIPSMIR CQTSLGIGRN
101: QKWWEKELKP NMKSVTSPQD LVDSLLNAGD KLVVVDFFSP GCGGCKALHP KICKIAEKNP EVEFLQVNYE EQRSLCQSLH VHVLPFFRFY RGSSGRVCSF
201: SCTNATINKF KEALEKHGRE QCSVGKTKGL EEKELVAMAT NKDLSFDYKP KNNEVNREIK ENDTIIQRSP TSKEQDEKCS LLISPAGIA
101: QKWWEKELKP NMKSVTSPQD LVDSLLNAGD KLVVVDFFSP GCGGCKALHP KICKIAEKNP EVEFLQVNYE EQRSLCQSLH VHVLPFFRFY RGSSGRVCSF
201: SCTNATINKF KEALEKHGRE QCSVGKTKGL EEKELVAMAT NKDLSFDYKP KNNEVNREIK ENDTIIQRSP TSKEQDEKCS LLISPAGIA
001: MATDSFIKLN PISFNRARFD LRDFAGISPK SISSLCCISP RLISCNHFSP RTLISGENGN ILFSKKKIPA FVRCQTSLGI GRNQKWWEKE LKPNMKSVTS
101: PQDLVVSLRN AGDKLVVVDF FSPSCGGCKA LHPKICKIAE KNPEVEFLQV NYEEHRSLCQ SLNIHVLPFF RFYRGSSGRV CSFSCTNATI RKFKEALEKH
201: GREQCSIGET KGLEEKELVA MAANKDLSFD YKPTSCGNIQ EQKKKEIFLP KSPTFNKQKE VEHSLLLVSP APA
101: PQDLVVSLRN AGDKLVVVDF FSPSCGGCKA LHPKICKIAE KNPEVEFLQV NYEEHRSLCQ SLNIHVLPFF RFYRGSSGRV CSFSCTNATI RKFKEALEKH
201: GREQCSIGET KGLEEKELVA MAANKDLSFD YKPTSCGNIQ EQKKKEIFLP KSPTFNKQKE VEHSLLLVSP APA
Arabidopsis Description
ACHT3Thioredoxin-like 1-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22779]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.