Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30208 | Canola | plastid | 83.47 | 84.17 |
| CDY54277 | Canola | plastid | 78.93 | 78.6 |
| Bra011127.1-P | Field mustard | plastid | 77.27 | 77.92 |
| AT4G29670.2 | Thale cress | plastid | 68.18 | 69.92 |
| VIT_11s0016g02310.t01 | Wine grape | plastid | 54.96 | 64.25 |
| KRH74152 | Soybean | plastid | 50.83 | 58.02 |
| GSMUA_Achr1P14420_001 | Banana | plastid | 49.59 | 55.81 |
| PGSC0003DMT400008881 | Potato | plastid | 53.31 | 55.36 |
| KRH49061 | Soybean | plastid | 50.0 | 55.25 |
| CDX90776 | Canola | plastid | 43.39 | 48.61 |
| CDX94364 | Canola | plastid | 43.39 | 48.39 |
| CDX89357 | Canola | plastid | 41.74 | 46.76 |
| CDX80647 | Canola | plastid | 21.9 | 38.69 |
| CDY06319 | Canola | plastid | 30.99 | 28.74 |
| CDY22676 | Canola | plastid | 30.99 | 27.88 |
| CDY56937 | Canola | plastid | 29.75 | 27.59 |
| CDX93552 | Canola | plastid | 30.99 | 27.57 |
| CDY66710 | Canola | plastid | 25.21 | 27.48 |
| CDX95049 | Canola | plastid | 30.17 | 27.24 |
| CDY02147 | Canola | plastid | 28.93 | 26.72 |
| CDY37738 | Canola | endoplasmic reticulum | 28.1 | 23.53 |
| CDY65919 | Canola | endoplasmic reticulum, golgi, plastid | 24.79 | 22.22 |
Protein Annotations
| MapMan:10.5.7 | Gene3D:3.40.30.10 | GO:A0A078I158 | UniProt:A0A078I158 | EnsemblPlants:CDY43516 | ProteinID:CDY43516 |
| ProteinID:CDY43516.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0045454 | EnsemblPlantsGene:GSBRNA2T00076799001 | InterPro:IPR013766 | PFAM:PF00085 | ScanProsite:PS00194 | PFscan:PS51352 |
| PANTHER:PTHR43601 | PANTHER:PTHR43601:SF10 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain |
| UniParc:UPI0004EF3CE4 | SEG:seg | : | : | : | : |
Description
BnaA01g07280DBnaA01g07280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I158]
Coordinates
chrLK032560:-:69872..71452
Molecular Weight (calculated)
26565.8 Da
IEP (calculated)
9.128
GRAVY (calculated)
-0.245
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVVRLSAT SVQAIRVSSS FTSFATTLNP LKPCLPPNLN SDKRLRLLSS SPSCSSSHYP SSGLASHSPL KRSKSKLVRV KVDETVAETE PPKWWERNAG
101: PNMVDIHSTE EFLKALSEAG ERLVIVEFYG TWCASCRALF PKLCKTAVEH PDILFLKVNF DENKPMCKSL NVKVLPYFHF YRGADGQLES FSCSLAKFQK
201: IKDAIRLHNT DRCSIGPAKG PEGFTLESLS VQTNAAQPAG SS
101: PNMVDIHSTE EFLKALSEAG ERLVIVEFYG TWCASCRALF PKLCKTAVEH PDILFLKVNF DENKPMCKSL NVKVLPYFHF YRGADGQLES FSCSLAKFQK
201: IKDAIRLHNT DRCSIGPAKG PEGFTLESLS VQTNAAQPAG SS
001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS
Arabidopsis Description
ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.