CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012959.1-P	Field mustard	plastid	95.42	95.42
CDY56937	Canola	plastid	90.84	91.19
CDX80647	Canola	plastid	42.37	81.02
AT5G61440.1	Thale cress	plastid	67.18	71.84
CDY65919	Canola	endoplasmic reticulum, golgi, plastid	59.92	58.15
PGSC0003DMT400083161	Potato	plastid	40.08	47.3
Solyc06g069720.2.1	Tomato	plastid	36.64	47.06
VIT_17s0000g06370.t01	Wine grape	cytosol, plastid	46.18	46.36
Solyc03g115870.2.1	Tomato	cytosol, plastid	42.75	45.9
PGSC0003DMT400050229	Potato	cytosol	42.75	45.16
KRH54570	Soybean	plastid	43.51	42.07
KRH63313	Soybean	plastid	41.98	40.59
CDY22676	Canola	plastid	40.46	39.41
CDX95049	Canola	plastid	40.08	39.18
CDY06319	Canola	plastid	38.93	39.08
CDX93552	Canola	plastid	38.93	37.5
CDY66710	Canola	plastid	30.53	36.04
CDY37738	Canola	endoplasmic reticulum	39.31	35.64
OQU93158	Sorghum	plastid	27.86	34.43
GSMUA_Achr10P...	Banana	cytosol	38.17	33.78
CDY54277	Canola	plastid	27.48	29.63
CDY43516	Canola	plastid	26.72	28.93
CDY30208	Canola	plastid	26.34	28.75
GSMUA_Achr10P...	Banana	mitochondrion	38.17	28.65
CDX89357	Canola	plastid	22.9	27.78
CDX90776	Canola	plastid	21.76	26.39
CDX94364	Canola	plastid	21.37	25.81
Os03t0168500-00	Rice	plastid	17.18	25.42

Protein Annotations

EnsemblPlants:CDY02147	EnsemblPlantsGene:GSBRNA2T00113545001	Gene3D:3.40.30.10	GO:A0A078ELZ4	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR43601	PANTHER:PTHR43601:SF4	PFAM:PF00085	PFscan:PS51352	ProteinID:CDY02147
ProteinID:CDY02147.1	SUPFAM:SSF52833	UniParc:UPI0004EF253B	MapMan:10.5.7	:	:

Description

BnaA03g40200D

Coordinates

chrLK031932:-:371818..373161

Molecular Weight (calculated)

28845.8 Da

IEP (calculated)

8.797

GRAVY (calculated)

-0.234

Length

262 amino acids

Sequence
(BLAST)

001: MDAISPLRAV CGSGGAQYSR TRIDHGLSGF CSFSQENKSK SKLSPVMSID LKEHPMASNQ TLTALSSSYV VPTKTSSIGM SRGMRWWEKS TKVNMLEIHS
101: ANHLVDSLLN AGDRLVVLDF YSPGCGGCKS LHPKICQLAE SNPNVMFLKV NQEELRTMCH GLNVHVLPFF KFYRGAEGKL CSFSCTIATI NKFKKALDKH
201: GSERCSLGQA KGLDSKELMA LASVGELKMD LDSLTVHQDV LSSSKASNFF YKPEEQHQKM VV

Best Arabidopsis Sequence Match ( AT5G61440.1 )
(BLAST)

001: MDAISSLGTN CVLSGVSPFS QENQSKSKLS PFMSLDLKEH PMASADFTNQ TLTAFSSSSA SPFQAKTSSI GMSRGMRWWE KSTNHNMLEI QSANHLVDSL
101: LNAGDRLVVL DFYSPGCGGC KSLHPKICQL AETNPNVMFL KVNQEELRTM CHGLNVHVLP FFKFYRGAEG KVCSFSCTIA TINKFKKALD KHGSERCSLG
201: DAKGLDEKEL AALASVGELK MNSLTMHQAS NIGYKTEEQY QTMVL

Arabidopsis Description

ACHT5Thioredoxin-like 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.