CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02147	Canola	plastid	91.19	90.84
CDX80647	Canola	plastid	42.91	81.75
AT5G61440.1	Thale cress	plastid	68.58	73.06
CDY65919	Canola	endoplasmic reticulum, golgi, plastid	60.92	58.89
PGSC0003DMT400083161	Potato	plastid	41.38	48.65
Solyc06g069720.2.1	Tomato	plastid	37.55	48.04
VIT_17s0000g06370.t01	Wine grape	cytosol, plastid	47.13	47.13
Solyc03g115870.2.1	Tomato	cytosol, plastid	43.68	46.72
PGSC0003DMT400050229	Potato	cytosol	43.68	45.97
KRH54570	Soybean	plastid	44.44	42.8
KRH63313	Soybean	plastid	42.91	41.33
CDY22676	Canola	plastid	41.38	40.15
CDY06319	Canola	plastid	39.85	39.85
CDX95049	Canola	plastid	39.85	38.81
CDX93552	Canola	plastid	39.46	37.87
CDY66710	Canola	plastid	31.03	36.49
CDY37738	Canola	endoplasmic reticulum	39.46	35.64
OQU93158	Sorghum	plastid	27.97	34.43
GSMUA_Achr10P...	Banana	cytosol	38.7	34.12
CDY54277	Canola	plastid	27.97	30.04
CDY30208	Canola	plastid	27.59	30.0
CDY43516	Canola	plastid	27.59	29.75
GSMUA_Achr10P...	Banana	mitochondrion	39.08	29.23
CDX89357	Canola	plastid	23.75	28.7
CDX90776	Canola	plastid	22.61	27.31
Os03t0168500-00	Rice	plastid	18.39	27.12
CDX94364	Canola	plastid	22.22	26.73

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	GO:A0A078J1E1	UniProt:A0A078J1E1	EnsemblPlants:CDY56937	ProteinID:CDY56937
ProteinID:CDY56937.1	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00020290001	InterPro:IPR013766	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601
PANTHER:PTHR43601:SF4	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EE919F	SEG:seg

Description

BnaC07g49920DBnaC07g49920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1E1]

Coordinates

chrLK033533:-:23979..25293

Molecular Weight (calculated)

28582.6 Da

IEP (calculated)

8.419

GRAVY (calculated)

-0.184

Length

261 amino acids

Sequence
(BLAST)

001: MDAISPLRAV CGSGGAQYSG TRIDHGLSGF CSFSQENKSK SKLSPVMSLK LKEHPMASNQ TLTALSSSSY AAKTSSIGMS RGMRWWEKST KVNMLEIHSA
101: NHLVDSLLNA GDRLVVLDFY SPGCGGCKSL HPKICQLAES NPNVMFLKVN QEELRTMCHG LNVHVLPFFK FYRGAEGKLC SFSCTIATIN KFKKALDKHG
201: SERCSLGPAK GLDSKELMAL ASVGELKMDL DFLTVHQDVL PLSSASSFCY ETEEQHQKMM V

Best Arabidopsis Sequence Match ( AT5G61440.1 )
(BLAST)

001: MDAISSLGTN CVLSGVSPFS QENQSKSKLS PFMSLDLKEH PMASADFTNQ TLTAFSSSSA SPFQAKTSSI GMSRGMRWWE KSTNHNMLEI QSANHLVDSL
101: LNAGDRLVVL DFYSPGCGGC KSLHPKICQL AETNPNVMFL KVNQEELRTM CHGLNVHVLP FFKFYRGAEG KVCSFSCTIA TINKFKKALD KHGSERCSLG
201: DAKGLDEKEL AALASVGELK MNSLTMHQAS NIGYKTEEQY QTMVL

Arabidopsis Description

ACHT5Thioredoxin-like 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.