Factsheet for VIT_17s0000g06370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80647	Canola	plastid	32.95	62.77
PGSC0003DMT400050229	Potato	cytosol	52.87	55.65
Solyc03g115870.2.1	Tomato	cytosol, plastid	51.34	54.92
PGSC0003DMT400083161	Potato	plastid	46.36	54.5
Solyc06g069720.2.1	Tomato	plastid	42.15	53.92
KRH54570	Soybean	plastid	55.17	53.14
KRH63313	Soybean	plastid	54.41	52.4
AT5G61440.1	Thale cress	plastid	47.13	50.2
CDY56937	Canola	plastid	47.13	47.13
Bra012959.1-P	Field mustard	plastid	46.74	46.56
CDY02147	Canola	plastid	46.36	46.18
CDY65919	Canola	endoplasmic reticulum, golgi, plastid	41.76	40.37
GSMUA_Achr10P...	Banana	cytosol	43.68	38.51
VIT_08s0007g07620.t01	Wine grape	plastid	42.91	36.25
VIT_11s0016g02310.t01	Wine grape	plastid	27.59	34.78
OQU93158	Sorghum	plastid	27.97	34.43
GSMUA_Achr10P...	Banana	mitochondrion	45.59	34.1
VIT_09s0002g02380.t01	Wine grape	plastid	27.59	33.33
Os03t0168500-00	Rice	plastid	19.54	28.81

Protein Annotations

MapMan:10.5.7	EntrezGene:100263807	wikigene:100263807	Gene3D:3.40.30.10	EMBL:AM468060	EMBL:AM481278
ProteinID:CAN64194	ProteinID:CAN64194.1	ProteinID:CAN77175	ProteinID:CAN77175.1	ProteinID:CBI15208	ProteinID:CBI15208.3
UniProt:D7SI98	EMBL:FN594950	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EntrezGene:LOC100263807	wikigene:LOC100263807	PFAM:PF00085
PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF4	SUPFAM:SSF52833	TIGR:TC63249	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001BE0B58	ArrayExpress:VIT_17s0000g06370	EnsemblPlantsGene:VIT_17s0000g06370	EnsemblPlants:VIT_17s0000g06370.t01	unigene:Vvi.7541
RefSeq:XP_002284847	RefSeq:XP_002284847.1	:	:	:	:

Description

No Description!

Coordinates

chr17:-:6914947..6916663

Molecular Weight (calculated)

28911.1 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.121

Length

261 amino acids

Sequence
(BLAST)

001: MEASFRPKSK GVHESCASFG SLKFKESLVL GSRFTGKHVF ITDQKCLRDW SFKAPYKFSV HAQASICVSR ALRWWEKTLK TNMVEIHSAQ ELVDSLLNAG
101: DRLVVVDFYS PRCGGCKALH PKICQLAELN PNAIFLKVDY EELKTMCHAL HIHVLPFFRF YRGAEGRVCS FSCTNATIKK FKDALAKHGA NRCSLGPAKG
201: LDESELLKLA AVGEIPLNLP LPSSKGEVME DSALKGAHMS GFWGKAGSNM ELEEESAILK V

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.