Factsheet for VIT_08s0007g07620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G017310.1	Barley	cytosol	44.01	65.7
PGSC0003DMT400060823	Potato	mitochondrion	48.87	65.65
Solyc10g080730.1.1	Tomato	plastid	48.54	58.37
GSMUA_Achr6P32280_001	Banana	plastid	50.81	57.72
CDX95049	Canola	plastid	49.51	57.09
AT1G08570.1	Thale cress	plastid	50.16	56.36
CDX93552	Canola	plastid	49.51	56.25
GSMUA_Achr5P07610_001	Banana	mitochondrion	34.63	56.02
KRH06734	Soybean	plastid	53.72	55.52
Bra018614.1-P	Field mustard	plastid	48.22	54.98
KRG94786	Soybean	plastid	52.75	54.88
Bra031632.1-P	Field mustard	plastid	46.28	54.79
Os07t0684100-01	Rice	plastid	49.19	54.48
TraesCS4A01G130400.1	Wheat	plastid	48.54	54.35
TraesCS4D01G176100.1	Wheat	plastid	48.54	54.35
GSMUA_Achr9P04970_001	Banana	plastid	48.87	54.32
TraesCS2A01G100900.1	Wheat	plastid	47.9	54.21
TraesCS2B01G118100.1	Wheat	plastid	47.9	54.21
CDY06319	Canola	plastid	45.63	54.02
GSMUA_Achr8P21480_001	Banana	plastid	46.28	53.76
TraesCS2D01G100500.1	Wheat	plastid	47.25	53.68
HORVU4Hr1G051400.3	Barley	plastid	47.9	53.62
TraesCS4B01G174100.1	Wheat	plastid	47.9	53.62
PGSC0003DMT400048452	Potato	plastid	52.1	53.49
CDY22676	Canola	plastid	46.28	53.16
Zm00001d047555_P001	Maize	plastid	48.22	53.02
KXG39469	Sorghum	plastid	48.54	53.0
EER92835	Sorghum	plastid	44.98	52.26
Zm00001d022518_P002	Maize	plastid	45.95	52.21
Os03t0326500-01	Rice	mitochondrion	18.45	51.82
KXG36973	Sorghum	plastid	46.93	51.79
Zm00001d028992_P001	Maize	plastid	46.93	51.06
Solyc12g019740.1.1	Tomato	plastid	48.87	50.5
Bra021838.1-P	Field mustard	plastid	41.1	46.69
AT2G33270.1	Thale cress	plastid	40.78	46.15
CDY37738	Canola	endoplasmic reticulum	41.75	44.64
CDY66710	Canola	plastid	32.04	44.59
VIT_17s0000g06370.t01	Wine grape	cytosol, plastid	36.25	42.91
VIT_11s0016g02310.t01	Wine grape	plastid	24.92	37.2
VIT_09s0002g02380.t01	Wine grape	plastid	24.27	34.72

Protein Annotations

MapMan:10.5.7	EntrezGene:100260578	wikigene:100260578	Gene3D:3.40.30.10	EMBL:AM432580	ProteinID:CAN64807
ProteinID:CAN64807.1	ProteinID:CBI29919	ProteinID:CBI29919.3	UniProt:D7TI43	EMBL:FN595991	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	EntrezGene:LOC100260578	wikigene:LOC100260578	PFAM:PF00085	PFscan:PS51352
PANTHER:PTHR43601	PANTHER:PTHR43601:SF9	SUPFAM:SSF52833	TIGR:TC61161	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0001BE34CF	ArrayExpress:VIT_08s0007g07620	EnsemblPlantsGene:VIT_08s0007g07620	EnsemblPlants:VIT_08s0007g07620.t01	unigene:Vvi.7439	RefSeq:XP_002282457
RefSeq:XP_002282457.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:21108449..21110396

Molecular Weight (calculated)

34032.8 Da

IEP (calculated)

8.624

GRAVY (calculated)

-0.312

Length

309 amino acids

Sequence
(BLAST)

001: MAQILSKTSV FSPCHHHHRR CCVSAFPNND YGHHRSAAPA SARGFPSLKL KHRNLRSLSS SSSNSDFHGG RIVLQEIGSM PKRRNAQASC TLMGLAIGKA
101: QKWWEKGLQP NMKEVTGAQD LVDSLLNAGD KLVVVDFFSP GCGGCRALHP KICQLAEMNP DVEFLQVNYE EHKSMCYSLN VHVLPFFRFY RGAHGRLCSF
201: SCTNATIKKF KDALAKHTPD RCSLEPTKGL EEKELLALSA NKDFSFNYSP KPVPTPAQEE IAVEATSAAA FSNEELPLPL PLPLSLPLPS TSLKGFHDSE
301: VKEKTVAMI

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.