Factsheet for Zm00001d022518_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36973	Sorghum	plastid	85.29	82.86
HORVU2Hr1G017310.1	Barley	cytosol	57.35	75.36
Os07t0684100-01	Rice	plastid	70.22	68.46
TraesCS2D01G100500.1	Wheat	plastid	66.91	66.91
TraesCS2A01G100900.1	Wheat	plastid	66.54	66.3
TraesCS2B01G118100.1	Wheat	plastid	66.54	66.3
PGSC0003DMT400060823	Potato	mitochondrion	46.32	54.78
Zm00001d047555_P001	Maize	plastid	56.25	54.45
GSMUA_Achr9P04970_001	Banana	plastid	53.31	52.16
GSMUA_Achr6P32280_001	Banana	plastid	51.47	51.47
GSMUA_Achr8P21480_001	Banana	plastid	49.63	50.75
GSMUA_Achr5P07610_001	Banana	mitochondrion	34.93	49.74
Zm00001d028992_P001	Maize	plastid	51.84	49.65
CDY06319	Canola	plastid	47.43	49.43
Solyc10g080730.1.1	Tomato	plastid	46.69	49.42
Bra031632.1-P	Field mustard	plastid	47.06	49.04
CDX93552	Canola	plastid	48.53	48.53
CDY22676	Canola	plastid	47.79	48.33
KRG94786	Soybean	plastid	52.57	48.15
AT1G08570.1	Thale cress	plastid	48.53	48.0
Bra018614.1-P	Field mustard	plastid	47.06	47.23
KRH06734	Soybean	plastid	51.84	47.16
CDX95049	Canola	plastid	45.96	46.64
VIT_08s0007g07620.t01	Wine grape	plastid	52.21	45.95
PGSC0003DMT400048452	Potato	plastid	50.74	45.85
Solyc12g019740.1.1	Tomato	plastid	47.79	43.48
Bra021838.1-P	Field mustard	plastid	42.28	42.28
AT2G33270.1	Thale cress	plastid	40.81	40.66
CDY37738	Canola	endoplasmic reticulum	41.18	38.75
CDY66710	Canola	plastid	30.88	37.84
Zm00001d037748_P001	Maize	plastid	26.1	31.98
Zm00001d010000_P001	Maize	plastid	18.38	31.06

Protein Annotations

MapMan:10.5.7	EntrezGene:100272269	Gene3D:3.40.30.10	EMBL:BT084302	UniProt:C4J0F5	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
ProteinID:ONM60902.1	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF2	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001A4C895	EnsemblPlantsGene:Zm00001d022518	EnsemblPlants:Zm00001d022518_P002	EnsemblPlants:Zm00001d022518_T002
SEG:seg	:	:	:	:	:

Description

Thioredoxin-like 1-1 chloroplastic

Coordinates

chr7:+:179280402..179282173

Molecular Weight (calculated)

28980.7 Da

IEP (calculated)

9.327

GRAVY (calculated)

-0.206

Length

272 amino acids

Sequence
(BLAST)

001: MADALCNGVV ASPCGRDVAG RARGAARAAL AESLQVAGHA SKTSFSAGRM SVKDSKPRPL SRSLEAAAPG QMNLSFPKAM RWWKKGLHPN MREVESAQDL
101: ADSLLSAGDK LVVVDFFSPG CGGCRALHPK IAQFAEKNPG VQFLQVNYET HKSMCYSLRV HVLPFFRFYR GAEGRVSSFS CTNATINKFK DALAKHGAER
201: CSLGPARGLD ESELMALAEN RDLHFTYDKP GGLVPLAEAI AKEAAAPGGP WLPLPASLLG QGSDNSLLPS GR

Best Arabidopsis Sequence Match ( AT1G08570.2 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPIV FGDSQDESFR RSSAITAQTT LRIGTAQKWW EKGLKDNMRE ISSAQELVDS LTNAGDKLVV VDFFSPGCGG
101: CKALHPKICQ FAEMNPDVQF LQVNYEEHKS MCYSLGVHVL PFFRFYRGSQ GRVCSFSCTN ATIKKFRDAL AKHGPDRCSL GPTKGLEEKE LVALAANKEL
201: NFTYTPKPVP VEKEAATPDS NPSLPVPLPS MSSNDEKTLV SAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.