Factsheet for Zm00001d028992_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047555_P001	Maize	plastid	70.77	71.53
KXG39469	Sorghum	plastid	65.49	65.72
HORVU4Hr1G051400.3	Barley	plastid	62.32	64.13
TraesCS4A01G130400.1	Wheat	plastid	61.97	63.77
TraesCS4D01G176100.1	Wheat	plastid	61.97	63.77
Os03t0326500-01	Rice	mitochondrion	24.3	62.73
TraesCS4B01G174100.1	Wheat	plastid	60.92	62.68
CDY06319	Canola	plastid	51.06	55.56
Bra031632.1-P	Field mustard	plastid	50.7	55.17
GSMUA_Achr8P21480_001	Banana	plastid	50.35	53.76
PGSC0003DMT400060823	Potato	mitochondrion	43.31	53.48
CDY22676	Canola	plastid	50.0	52.79
Zm00001d022518_P002	Maize	plastid	49.65	51.84
AT1G08570.1	Thale cress	plastid	50.0	51.64
CDX93552	Canola	plastid	49.3	51.47
GSMUA_Achr9P04970_001	Banana	plastid	50.35	51.44
Bra018614.1-P	Field mustard	plastid	48.94	51.29
CDX95049	Canola	plastid	48.24	51.12
GSMUA_Achr6P32280_001	Banana	plastid	48.59	50.74
GSMUA_Achr5P07610_001	Banana	mitochondrion	33.8	50.26
Solyc10g080730.1.1	Tomato	plastid	45.07	49.81
KRG94786	Soybean	plastid	51.41	49.16
KRH06734	Soybean	plastid	51.41	48.83
VIT_08s0007g07620.t01	Wine grape	plastid	51.06	46.93
PGSC0003DMT400048452	Potato	plastid	48.94	46.18
Solyc12g019740.1.1	Tomato	plastid	48.24	45.82
Bra021838.1-P	Field mustard	plastid	40.49	42.28
AT2G33270.1	Thale cress	plastid	40.49	42.12
CDY66710	Canola	plastid	31.34	40.09
CDY37738	Canola	endoplasmic reticulum	40.14	39.45
Zm00001d037748_P001	Maize	plastid	28.17	36.04
Zm00001d010000_P001	Maize	plastid	18.66	32.92

Protein Annotations

MapMan:10.5.7	EntrezGene:100191145	Gene3D:3.40.30.10	UniProt:B4F7S8	EMBL:BT033166	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
ProteinID:ONL97545.1	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00017B5FC3	EnsemblPlantsGene:Zm00001d028992	EnsemblPlants:Zm00001d028992_P001	EnsemblPlants:Zm00001d028992_T001
SEG:seg	:	:	:	:	:

Description

Thioredoxin-like 1-1 chloroplastic

Coordinates

chr1:-:53883358..53885907

Molecular Weight (calculated)

31311.8 Da

IEP (calculated)

10.272

GRAVY (calculated)

-0.390

Length

284 amino acids

Sequence
(BLAST)

001: MAAAQAISKG SVVSPCGNRA APGFLARRRG AVAARMAPSA ARIGGFWRKN AFPGGRLTLR TRRSRAASPT QMNMNLALGK SMRWWEKGLQ PNMREIESAQ
101: DLVDALTNAG DRLVVVDFFS PGCGGCRAFH PKICQFAEQN PDVLFLQVNY EEHKSMCHSL HVHVLPLFRF YRGAQGRLCS FSCTNATIKK FRDALAKHKP
201: DRCSLGPTRG LEESELLALA ANKDLQFTYA KQEPELIPRG DAPGEVVAPE PAKLPAAPKP LVRLGSEERS GWSRQEDEMH MRLS

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.