Factsheet for GSMUA_Achr8P21480_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G017310.1	Barley	cytosol	51.13	65.7
GSMUA_Achr9P04970_001	Banana	plastid	65.41	62.59
GSMUA_Achr6P32280_001	Banana	plastid	63.16	61.76
Os03t0326500-01	Rice	mitochondrion	24.81	60.0
GSMUA_Achr5P07610_001	Banana	mitochondrion	41.73	58.12
TraesCS4D01G176100.1	Wheat	plastid	58.27	56.16
TraesCS4A01G130400.1	Wheat	plastid	58.27	56.16
EER92835	Sorghum	plastid	56.02	56.02
HORVU4Hr1G051400.3	Barley	plastid	57.89	55.8
TraesCS4B01G174100.1	Wheat	plastid	57.14	55.07
KXG39469	Sorghum	plastid	57.89	54.42
PGSC0003DMT400060823	Potato	mitochondrion	46.24	53.48
TraesCS2B01G118100.1	Wheat	plastid	54.51	53.11
TraesCS2A01G100900.1	Wheat	plastid	54.51	53.11
Os07t0684100-01	Rice	plastid	55.64	53.05
Zm00001d047555_P001	Maize	plastid	56.02	53.02
TraesCS2D01G100500.1	Wheat	plastid	53.76	52.57
Bra031632.1-P	Field mustard	plastid	51.13	52.11
CDY06319	Canola	plastid	51.13	52.11
Bra018614.1-P	Field mustard	plastid	53.01	52.03
CDX95049	Canola	plastid	52.26	51.87
CDY22676	Canola	plastid	52.26	51.67
KXG36973	Sorghum	plastid	53.76	51.07
Solyc10g080730.1.1	Tomato	plastid	49.25	50.97
Zm00001d028992_P001	Maize	plastid	53.76	50.35
AT1G08570.1	Thale cress	plastid	51.88	50.18
Zm00001d022518_P002	Maize	plastid	50.75	49.63
CDX93552	Canola	plastid	50.38	49.26
KRG94786	Soybean	plastid	54.51	48.82
KRH06734	Soybean	plastid	54.51	48.49
PGSC0003DMT400048452	Potato	plastid	54.14	47.84
VIT_08s0007g07620.t01	Wine grape	plastid	53.76	46.28
Bra021838.1-P	Field mustard	plastid	46.99	45.96
Solyc12g019740.1.1	Tomato	plastid	51.13	45.48
CDY66710	Canola	plastid	36.84	44.14
AT2G33270.1	Thale cress	plastid	44.74	43.59
CDY37738	Canola	endoplasmic reticulum	45.11	41.52
GSMUA_Achr10P...	Banana	cytosol	41.35	37.16
GSMUA_Achr1P14420_001	Banana	plastid	28.2	34.88
GSMUA_Achr10P...	Banana	mitochondrion	40.23	30.66
GSMUA_Achr7P13460_001	Banana	mitochondrion	28.95	27.6

Protein Annotations

EnsemblPlants:GSMUA_Achr8P21480_001	EnsemblPlants:GSMUA_Achr8T21480_001	EnsemblPlantsGene:GSMUA_Achr8G21480_001	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	ncoils:Coil	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9	PFAM:PF00085	PFscan:PS51352
SEG:seg	SUPFAM:SSF52833	UniParc:UPI0002961377	UniProt:M0TSF1	MapMan:10.5.7	:

Description

Thioredoxin-like 1-2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G21480_001]

Coordinates

chr8:+:26363308..26365216

Molecular Weight (calculated)

29156.2 Da

IEP (calculated)

10.097

GRAVY (calculated)

-0.226

Length

266 amino acids

Sequence
(BLAST)

001: MAELLAQRCF LSSSSGHASL SRSREQRKSP AFVALRRSGF HGRTLALGAP RGKLLRGRVS SVPVQMTPSI GKSLKWWEKG LQANMKEIES AQDLVDSLLN
101: AGDKLVIVDF FSSGCGGCRA LHPKICQFAE KNPNVLFLQI NYEKLKSMCY SLHVHVLPFF RFYRGAHGRL GSFSCTNATI KKFKDALAKH STDRCSLGPA
201: KGLEESELLA LAANTDLSFN YAKMPSLFPS PDDVAERARA SPKFPVLATL SDTQDSEDKA MVTAGR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.