Factsheet for GSMUA_Achr1P14420_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g02310.t01	Wine grape	plastid	58.6	60.87
KRH74152	Soybean	plastid	55.81	56.6
KRH49061	Soybean	plastid	56.28	55.25
PGSC0003DMT400008881	Potato	plastid	54.88	50.64
CDY54277	Canola	plastid	56.28	49.79
CDY43516	Canola	plastid	55.81	49.59
Bra011127.1-P	Field mustard	plastid	54.88	49.17
CDY30208	Canola	plastid	54.42	48.75
Bra024139.1-P	Field mustard	plastid	54.42	48.75
AT4G29670.2	Thale cress	plastid	46.51	42.37
GSMUA_Achr7P13460_001	Banana	mitochondrion	54.88	42.29
GSMUA_Achr5P07610_001	Banana	mitochondrion	27.44	30.89
GSMUA_Achr6P32280_001	Banana	plastid	37.21	29.41
GSMUA_Achr8P21480_001	Banana	plastid	34.88	28.2
GSMUA_Achr9P04970_001	Banana	plastid	36.28	28.06
GSMUA_Achr10P...	Banana	cytosol	32.09	23.31
GSMUA_Achr10P...	Banana	mitochondrion	33.95	20.92

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016671	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSMUA_Achr1G14420_001	EnsemblPlants:GSMUA_Achr1P14420_001	EnsemblPlants:GSMUA_Achr1T14420_001
InterPro:IPR013766	UniProt:M0RZV0	PFAM:PF00085	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR43601
PANTHER:PTHR43601:SF10	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002969750
SEG:seg	:	:	:	:	:

Description

Thioredoxin-like 2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr1G14420_001]

Coordinates

chr1:-:10961726..10965782

Molecular Weight (calculated)

23929.9 Da

IEP (calculated)

8.296

GRAVY (calculated)

-0.185

Length

215 amino acids

Sequence
(BLAST)

001: MADVCFHLSL VAPPPTPLLP PRPHSPRLKV SPDPRLGAAS AALAFLPRRL ARFTVHAVVA EDERPKWWEK SAGPNMIDVH STEEFIHALS EAGDKLVIVE
101: FYGTWCASCR ALYPKLCRTV EEHPNILFIK VNFDENKPMC KRLNVRVLPY FHFYRGADGL LESFSCSLAK FQKIKDAIAM HNTDRCSIGP PTGVGDIDLL
201: GRSPSQEKPA EAASR

Best Arabidopsis Sequence Match ( AT4G29670.1 )
(BLAST)

001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS

Arabidopsis Description

ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.