CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49061	Soybean	plastid	73.58	71.23
VIT_11s0016g02310.t01	Wine grape	plastid	61.32	62.8
TraesCS1A01G124400.2	Wheat	plastid	56.6	56.6
TraesCS1D01G129500.2	Wheat	plastid	56.6	55.81
GSMUA_Achr1P14420_001	Banana	plastid	56.6	55.81
HORVU1Hr1G028680.1	Barley	plastid	56.13	55.35
TraesCS1B01G142600.2	Wheat	plastid	55.66	54.88
Os05t0200100-01	Rice	plastid	55.66	54.63
PGSC0003DMT400008881	Potato	plastid	59.91	54.51
EES19197	Sorghum	plastid	57.55	54.46
Zm00001d037748_P001	Maize	plastid	56.6	54.05
Solyc03g121480.2.1	Tomato	plastid	50.0	53.54
CDY43516	Canola	plastid	58.02	50.83
CDY30208	Canola	plastid	56.6	50.0
Bra024139.1-P	Field mustard	plastid	56.6	50.0
Bra011127.1-P	Field mustard	plastid	55.66	49.17
CDY54277	Canola	plastid	55.19	48.15
AT4G29670.2	Thale cress	plastid	50.47	45.34
Zm00001d010000_P001	Maize	plastid	33.96	44.72
KRH54570	Soybean	plastid	36.32	28.41
KRH63313	Soybean	plastid	33.96	26.57
KRH06734	Soybean	plastid	35.38	25.08
KRG94786	Soybean	plastid	34.91	24.92

Protein Annotations

MapMan:10.5.7	EntrezGene:100817252	Gene3D:3.40.30.10	EMBL:ACUP02000007	EnsemblPlantsGene:GLYMA_01G002700	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	UniProt:I1J4B6
InterPro:IPR013766	EnsemblPlants:KRH74152	ProteinID:KRH74152	ProteinID:KRH74152.1	PFAM:PF00085	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF10	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0001BA8564	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:339803..343224

Molecular Weight (calculated)

23775.7 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.065

Length

212 amino acids

Sequence
(BLAST)

001: MAYVDVIRLQ FQSFFFSPSP LSAKRLFYPL AYSSAPAPPA TLAFAPRKQL LSFKVCATVA ETGQPKWWEK NAPNMIDIHS TQEFLSALSQ AGDRLVIVEF
101: YGTWCASCRA LFPKLCRTAE EHPEILFLKV NFDENKPMCK RLNVKVLPYF HFYRGAEGQL ESFSCSLAKF QKIKDAMEIH NTARCSIGPP VSIGDLLAEP
201: SSVAKDRPAE SV

Best Arabidopsis Sequence Match ( AT4G29670.1 )
(BLAST)

001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS

Arabidopsis Description

ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.