Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G124400.2 | Wheat | plastid | 71.76 | 73.11 |
| TraesCS1D01G129500.2 | Wheat | plastid | 72.69 | 73.02 |
| TraesCS1B01G142600.2 | Wheat | plastid | 72.69 | 73.02 |
| EES19197 | Sorghum | plastid | 71.3 | 68.75 |
| HORVU1Hr1G028680.1 | Barley | plastid | 66.67 | 66.98 |
| Zm00001d037748_P001 | Maize | plastid | 67.13 | 65.32 |
| KRH74152 | Soybean | plastid | 54.63 | 55.66 |
| KRH49061 | Soybean | plastid | 55.09 | 54.34 |
| PGSC0003DMT400006408 | Potato | plastid | 46.76 | 51.79 |
| Solyc03g121480.2.1 | Tomato | plastid | 47.22 | 51.52 |
| VIT_09s0002g02380.t01 | Wine grape | plastid | 49.54 | 49.54 |
| AT4G26160.1 | Thale cress | plastid | 48.15 | 47.06 |
| Bra026460.1-P | Field mustard | plastid | 46.76 | 46.76 |
| CDX94364 | Canola | plastid | 46.76 | 46.54 |
| CDX90776 | Canola | plastid | 46.3 | 46.3 |
| CDX89357 | Canola | plastid | 44.91 | 44.91 |
| GSMUA_Achr7P13460_001 | Banana | mitochondrion | 54.63 | 42.29 |
| Os07t0684100-01 | Rice | plastid | 34.26 | 26.52 |
| Os03t0326500-01 | Rice | mitochondrion | 11.57 | 22.73 |
| Os03t0168500-00 | Rice | plastid | 18.52 | 22.6 |
Protein Annotations
| MapMan:10.5.7 | Gene3D:3.40.30.10 | EntrezGene:4338057 | ProteinID:AAV59369.1 | EMBL:AK061208 | EMBL:AK099199 |
| ProteinID:BAF16794.2 | ProteinID:BAS92705.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0019725 |
| GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 | EnsemblPlantsGene:Os05g0200100 | EnsemblPlants:Os05t0200100-01 | PFAM:PF00085 |
| ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR43601 | PANTHER:PTHR43601:SF10 | UniProt:Q5TKD8 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI00003B3409 | RefSeq:XP_015637663.1 | SEG:seg |
Description
Similar to Thioredoxin-like 6. (Os05t0200100-01);Similar to Thioredoxin-like 6. (Os05t0200100-02)
Coordinates
chr5:-:6233918..6237913
Molecular Weight (calculated)
23800.6 Da
IEP (calculated)
8.961
GRAVY (calculated)
-0.331
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEALLPLPR RLVVTASTPA CSSASSSTSP SPHCLLSRAN PRPPRLAAPS PPRHRRLKAH AAVSDKSEQP KWWEKNAGPN MIDIHSTQEF LDALRDAGDR
101: LVIVEFYGTW CGSCRALFPR LCRTAVENPD ILFLKVNFDE NKPMCKRLNV KVLPYFHFYR GADGQLEAFS CSLAKFQKLK DAIAVHNTAR CSIGPPVGVG
201: DVLDSPEEKP AEASPR
101: LVIVEFYGTW CGSCRALFPR LCRTAVENPD ILFLKVNFDE NKPMCKRLNV KVLPYFHFYR GADGQLEAFS CSLAKFQKLK DAIAVHNTAR CSIGPPVGVG
201: DVLDSPEEKP AEASPR
001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS
Arabidopsis Description
ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.