CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0200100-01	Rice	plastid	68.75	71.3
Zm00001d037748_P001	Maize	plastid	70.54	71.17
TraesCS1D01G129500.2	Wheat	plastid	67.86	70.7
TraesCS1B01G142600.2	Wheat	plastid	67.41	70.23
TraesCS1A01G124400.2	Wheat	plastid	63.39	66.98
HORVU1Hr1G028680.1	Barley	plastid	63.39	66.05
KRH74152	Soybean	plastid	54.46	57.55
KRH49061	Soybean	plastid	52.68	53.88
PGSC0003DMT400006408	Potato	plastid	44.64	51.28
Solyc03g121480.2.1	Tomato	plastid	43.75	49.49
VIT_09s0002g02380.t01	Wine grape	plastid	46.88	48.61
AT4G26160.1	Thale cress	plastid	45.09	45.7
Bra026460.1-P	Field mustard	plastid	43.75	45.37
CDX90776	Canola	plastid	42.86	44.44
CDX94364	Canola	plastid	42.86	44.24
GSMUA_Achr7P13460_001	Banana	mitochondrion	54.91	44.09
CDX89357	Canola	plastid	42.41	43.98
KXG39469	Sorghum	plastid	36.16	28.62
OQU93158	Sorghum	plastid	26.79	28.3
EER92835	Sorghum	plastid	31.7	26.69
KXG36973	Sorghum	plastid	32.59	26.07

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	EntrezGene:8055722	UniProt:C5YUK4	EnsemblPlants:EES19197	ProteinID:EES19197
ProteinID:EES19197.1	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	PFAM:PF00085	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR43601
PANTHER:PTHR43601:SF10	EnsemblPlantsGene:SORBI_3009G073900	SUPFAM:SSF52833	unigene:Sbi.2768	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0001A8873F	RefSeq:XP_002440767.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:9222542..9227297

Molecular Weight (calculated)

24580.6 Da

IEP (calculated)

9.377

GRAVY (calculated)

-0.246

Length

224 amino acids

Sequence
(BLAST)

001: MADALLLPRR FLAPSPAASG VSSSASSSPP CCWVLSAPGS PRRARLAAAH PQPRPRRLTR YKTYAAEPKS GEQPKWWEKN AGPNMIDIHS TVEFLDALRD
101: AGDRLVIVEF YGTWCGSCRA LFPRLCRTAL ENPDILFLKV NFDENKPMCK RLNVKVLPSF HFYRGADGLL VAFSCSLAKF QKLKDAIAMH NTARCSIGPP
201: VGVGDVDLLD STSPQEKPAE ASPR

Best Arabidopsis Sequence Match ( AT4G29670.1 )
(BLAST)

001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS

Arabidopsis Description

ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.