Factsheet for Zm00001d037748_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19197	Sorghum	plastid	71.17	70.54
TraesCS1D01G129500.2	Wheat	plastid	67.12	69.3
TraesCS1B01G142600.2	Wheat	plastid	67.12	69.3
Os05t0200100-01	Rice	plastid	65.32	67.13
HORVU1Hr1G028680.1	Barley	plastid	63.96	66.05
TraesCS1A01G124400.2	Wheat	plastid	63.06	66.04
Zm00001d010000_P001	Maize	plastid	46.85	64.6
KRH49061	Soybean	plastid	55.86	56.62
KRH74152	Soybean	plastid	54.05	56.6
Solyc03g121480.2.1	Tomato	plastid	45.05	50.51
PGSC0003DMT400006408	Potato	plastid	44.14	50.26
VIT_09s0002g02380.t01	Wine grape	plastid	45.95	47.22
Bra026460.1-P	Field mustard	plastid	44.14	45.37
AT4G26160.1	Thale cress	plastid	44.59	44.8
GSMUA_Achr7P13460_001	Banana	mitochondrion	55.41	44.09
CDX89357	Canola	plastid	42.34	43.52
CDX94364	Canola	plastid	42.34	43.32
CDX90776	Canola	plastid	41.44	42.59
Zm00001d047555_P001	Maize	plastid	37.39	29.54
Zm00001d028992_P001	Maize	plastid	36.04	28.17
Zm00001d022518_P002	Maize	plastid	31.98	26.1

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	ProteinID:AQK84723.1	UniProt:B6UHV8	EMBL:BT070114	EMBL:EU976823
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	PFAM:PF00085	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF10
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI000182FE77	EnsemblPlantsGene:Zm00001d037748
EnsemblPlants:Zm00001d037748_P001	EnsemblPlants:Zm00001d037748_T001	SEG:seg	:	:	:

Description

Thioredoxin-like 2-2 chloroplastic

Coordinates

chr6:+:136273610..136278904

Molecular Weight (calculated)

24568.6 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.237

Length

222 amino acids

Sequence
(BLAST)

001: MADALLLPCR FLAPLSVTSG ASSSASSSPP CRWVLSSPGS PWRPRLAAGQ RQPRPRRFTR HKICAAERGE QPKWWEKNAG PNMIDIHSTV EFLDALRDAG
101: DRLVIVEFYG TWCGSCRALF PRLCRTALET PDVLFLKVNF DENKPMCKRL NVKVLPFFHF YRGADGLLEA FSCSLAKFQK LKDAVAMHNT ARCSIGPPVG
201: VGDVDLLDST SPQEKPAEAS PH

Best Arabidopsis Sequence Match ( AT4G29670.1 )
(BLAST)

001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS

Arabidopsis Description

ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.