Factsheet for PGSC0003DMT400006408

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121480.2.1	Tomato	plastid	91.28	89.9
VIT_09s0002g02380.t01	Wine grape	plastid	53.33	48.15
CDX94364	Canola	plastid	52.31	47.0
Os05t0200100-01	Rice	plastid	51.79	46.76
CDX90776	Canola	plastid	51.28	46.3
TraesCS1A01G124400.2	Wheat	plastid	50.26	46.23
HORVU1Hr1G028680.1	Barley	plastid	50.77	46.05
Bra026460.1-P	Field mustard	plastid	50.77	45.83
TraesCS1D01G129500.2	Wheat	plastid	49.74	45.12
TraesCS1B01G142600.2	Wheat	plastid	49.74	45.12
EES19197	Sorghum	plastid	51.28	44.64
CDX89357	Canola	plastid	49.23	44.44
Zm00001d037748_P001	Maize	plastid	50.26	44.14
AT4G26160.1	Thale cress	plastid	49.23	43.44
PGSC0003DMT400008881	Potato	plastid	51.79	43.35
GSMUA_Achr7P13460_001	Banana	mitochondrion	50.77	35.48
Zm00001d010000_P001	Maize	plastid	26.67	32.3
PGSC0003DMT400083161	Potato	plastid	32.31	28.38
PGSC0003DMT400060823	Potato	mitochondrion	32.31	27.39
PGSC0003DMT400050229	Potato	cytosol	34.36	27.02
PGSC0003DMT400048452	Potato	plastid	34.87	22.59

Protein Annotations

MapMan:10.5.7	EntrezGene:102591517	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010109	GO:GO:0015979	GO:GO:0016671
GO:GO:0019725	GO:GO:0045454	GO:GO:0051776	GO:GO:0055114	InterPro:IPR013766	UniProt:M0ZRA7
PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400002503	PGSC:PGSC0003DMG400002503	EnsemblPlants:PGSC0003DMT400006408	ScanProsite:PS00194	PFscan:PS51352
PANTHER:PTHR43601	PANTHER:PTHR43601:SF10	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain
UniParc:UPI000296E545	RefSeq:XP_006342994.1	:	:	:	:

Description

Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400002503]

Coordinates

chr3:-:60762126..60765800

Molecular Weight (calculated)

22064.4 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.207

Length

195 amino acids

Sequence
(BLAST)

001: MQGHSVFSLK VSSFSPFPSN PTYSSLPFKA AKLNSWGKRV LDSRVVNPFD YALNKPLLYF KVHATAAETD QPKWWEKNAS NMVDIHSTQE FLDALSQAGD
101: KLVIVEFYGT WCASCRALFP KVCMIAEKHP EILFIKVNFD ENKSLCKSLN VKVLPYFHFY RGADGLLDSF SCSLAKLQKL KDAIENYNPA HAKES

Best Arabidopsis Sequence Match ( AT4G26160.1 )
(BLAST)

001: MSPTTTSLRS LSFSLYASSN STPISTPIEA RQLLSSCNRF YGLSSSSSSS SLTTSSLIGN LVFSSRNQSL SVKVQALAAE TEQPKWWERK AGPNMIDITS
101: AEQFLNALKD AGDRLVIVDF YGTWCGSCRA MFPKLCKTAK EHPNILFLKV NFDENKSLCK SLNVKVLPYF HFYRGADGQV ESFSCSLAKF QKLREAIERH
201: NVGSISNISS SASEKVEDSS E

Arabidopsis Description

ACHT1Thioredoxin-like 2-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.