Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g02310.t01 | Wine grape | plastid | 57.51 | 64.73 |
| KRH74152 | Soybean | plastid | 54.51 | 59.91 |
| KRH49061 | Soybean | plastid | 53.22 | 56.62 |
| GSMUA_Achr1P14420_001 | Banana | plastid | 50.64 | 54.88 |
| Bra024139.1-P | Field mustard | plastid | 55.36 | 53.75 |
| CDY30208 | Canola | plastid | 55.36 | 53.75 |
| CDY43516 | Canola | plastid | 55.36 | 53.31 |
| CDY54277 | Canola | plastid | 54.08 | 51.85 |
| PGSC0003DMT400006408 | Potato | plastid | 43.35 | 51.79 |
| Bra011127.1-P | Field mustard | plastid | 51.5 | 50.0 |
| AT4G29670.2 | Thale cress | plastid | 44.64 | 44.07 |
| PGSC0003DMT400083161 | Potato | plastid | 30.47 | 31.98 |
| PGSC0003DMT400050229 | Potato | cytosol | 31.76 | 29.84 |
| PGSC0003DMT400060823 | Potato | mitochondrion | 28.76 | 29.13 |
| PGSC0003DMT400048452 | Potato | plastid | 33.91 | 26.25 |
Protein Annotations
| MapMan:10.5.7 | EntrezGene:102593001 | Gene3D:3.40.30.10 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | InterPro:IPR013766 |
| UniProt:M0ZV80 | PFAM:PF00085 | EnsemblPlantsGene:PGSC0003DMG400003449 | PGSC:PGSC0003DMG400003449 | EnsemblPlants:PGSC0003DMT400008881 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR43601 | PANTHER:PTHR43601:SF10 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS |
| InterPro:Thioredoxin_domain | UniParc:UPI000294AEF3 | RefSeq:XP_006346556.1 | SEG:seg | : | : |
Description
Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400003449]
Coordinates
chr7:-:33935008..33940489
Molecular Weight (calculated)
25818.7 Da
IEP (calculated)
8.494
GRAVY (calculated)
-0.214
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLMRFSLN SLGFCSSPNS SLLTSFSSSL NSTQTPNQKL HKRGVSFSDS PSTSLEFVSR IAFTPNKRFP TVKAHATVTR TEEPKWWERN AGPNMLDIHS
101: TQEFLDALSQ AGDRLVIVEF YGTWCASCKA LFPKFCRTAQ EHPEIMFLKV NFDANKSMCK ALNVKVLPYF HFYRGADGQL ESFSCSLAKF QKIKDAIQLH
201: NTDRCSIGPP IGVGDLTLEL LSGTKDVSAA AST
101: TQEFLDALSQ AGDRLVIVEF YGTWCASCKA LFPKFCRTAQ EHPEIMFLKV NFDANKSMCK ALNVKVLPYF HFYRGADGQL ESFSCSLAKF QKIKDAIQLH
201: NTDRCSIGPP IGVGDLTLEL LSGTKDVSAA AST
001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS
Arabidopsis Description
ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.