CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74152	Soybean	plastid	71.23	73.58
VIT_11s0016g02310.t01	Wine grape	plastid	57.99	61.35
TraesCS1A01G124400.2	Wheat	plastid	56.16	58.02
HORVU1Hr1G028680.1	Barley	plastid	56.16	57.21
TraesCS1B01G142600.2	Wheat	plastid	55.71	56.74
GSMUA_Achr1P14420_001	Banana	plastid	55.25	56.28
Zm00001d037748_P001	Maize	plastid	56.62	55.86
TraesCS1D01G129500.2	Wheat	plastid	54.34	55.35
Os05t0200100-01	Rice	plastid	54.34	55.09
PGSC0003DMT400008881	Potato	plastid	56.62	53.22
EES19197	Sorghum	plastid	53.88	52.68
Solyc03g121480.2.1	Tomato	plastid	47.49	52.53
CDY43516	Canola	plastid	55.25	50.0
Bra024139.1-P	Field mustard	plastid	54.34	49.58
CDY30208	Canola	plastid	54.34	49.58
Bra011127.1-P	Field mustard	plastid	53.88	49.17
CDY54277	Canola	plastid	53.42	48.15
Zm00001d010000_P001	Maize	plastid	34.7	47.2
AT4G29670.2	Thale cress	plastid	50.23	46.61
KRH54570	Soybean	plastid	34.7	28.04
KRH63313	Soybean	plastid	33.79	27.31
KRG94786	Soybean	plastid	34.7	25.59
KRH06734	Soybean	plastid	34.25	25.08

Protein Annotations

MapMan:10.5.7	EntrezGene:100787640	Gene3D:3.40.30.10	EMBL:ACUP02004330	EnsemblPlantsGene:GLYMA_07G129600	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	UniProt:I1KJV9
InterPro:IPR013766	EnsemblPlants:KRH49061	ProteinID:KRH49061	ProteinID:KRH49061.1	PFAM:PF00085	ScanProsite:PS00194
PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF10	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS
InterPro:Thioredoxin_domain	UniParc:UPI0002338C10	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:15403735..15409701

Molecular Weight (calculated)

24547.5 Da

IEP (calculated)

8.820

GRAVY (calculated)

-0.126

Length

219 amino acids

Sequence
(BLAST)

001: MAHVDVIRLQ FQPFRFSSSS FFTPSPFSAK ILFSPLAYSS SRPAPPATLA FPPRKHLLSF KVSATVAETG QPKWWEKNAP NMIDIHSTQE FLSAMSQAGD
101: RLVIVEFYGT WCASCRALFP KLCRTAEEHP EIVFLKVNFD ENKPMCKRLN VKVLPYFHFY RGTEGQLESF SCSLAKFQKI KDAIEIHNTA RCSIGPPVSI
201: GDLLAEPSSV AKDRPAESV

Best Arabidopsis Sequence Match ( AT4G29670.1 )
(BLAST)

001: MAGVVRLTTT SVQAIRVSSS FSSFATALNP LQPCLPPNSN LNSDKRLRLL SSSPSCSSSH YHPSSGLGSH LPLRRPKSQV VRVKVDENVA ETEPPKWWER
101: NAPNMVDIHS TEEFLSALSG AGERLVIVEF YGTWCASCRA LFPKLCKTAV EHPDIVFLKV NFDENKPMCK SLNVRVLPFF HFYRGADGQL ESFSCSLAKF
201: QKIKDAIQLH NTDRCSLGPA KVPEGLTLAK PAASS

Arabidopsis Description

ACHT2Thioredoxin-like 2-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LCT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.