CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63313	Soybean	plastid	69.74	69.74
CDX80647	Canola	plastid	31.73	62.77
Solyc03g115870.2.1	Tomato	cytosol, plastid	50.92	56.56
PGSC0003DMT400050229	Potato	cytosol	50.55	55.24
VIT_17s0000g06370.t01	Wine grape	cytosol, plastid	53.14	55.17
Solyc06g069720.2.1	Tomato	plastid	40.96	54.41
PGSC0003DMT400083161	Potato	plastid	43.17	52.7
AT5G61440.1	Thale cress	plastid	42.8	47.35
CDY56937	Canola	plastid	42.8	44.44
Bra012959.1-P	Field mustard	plastid	42.8	44.27
CDY02147	Canola	plastid	42.07	43.51
KRG94786	Soybean	plastid	42.8	39.06
KRH06734	Soybean	plastid	42.8	38.8
GSMUA_Achr10P...	Banana	cytosol	41.7	38.18
CDY65919	Canola	endoplasmic reticulum, golgi, plastid	37.64	37.78
OQU93158	Sorghum	plastid	29.15	37.26
KRH74152	Soybean	plastid	28.41	36.32
GSMUA_Achr10P...	Banana	mitochondrion	45.76	35.53
KRH49061	Soybean	plastid	28.04	34.7
Os03t0168500-00	Rice	plastid	20.66	31.64

Protein Annotations

MapMan:10.5.7	EntrezGene:100800129	Gene3D:3.40.30.10	EMBL:ACUP02003542	EMBL:BT093830	UniProt:C6T8M7
EnsemblPlantsGene:GLYMA_06G195100	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	EnsemblPlants:KRH54570	ProteinID:KRH54570	ProteinID:KRH54570.1	PFAM:PF00085
PANTHER:PTHR43601	PANTHER:PTHR43601:SF4	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001B16221

Description

hypothetical protein

Coordinates

chr6:-:17443844..17445873

Molecular Weight (calculated)

29486.8 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.052

Length

271 amino acids

Sequence
(BLAST)

001: MACSMNSVFC VPELNESIFG SKTKGVLLPC PSKTANAKSW GCSVLSNAFM GKSIALGEKG SGCCNSKFSS NVPVHAQATI CVSKALKWWK KTLKPNMIEI
101: HSAQELVHSL LNAGDSLVVV DFYSPGCGGC KALHPKICQI AELHPNAIFL KVNYEELKTM CHGLRIHVLP FFRFYRGAEG RVSSFSCTNA TIKKFKDALT
201: KHGNERCSLG PAKGLEESEL KILASIGEIN SSPLLSPKQG KLEDLLTESH DFAGVWNMEN NSRGLMLDAI Y

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.