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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os03t0168500-00 Rice plastid 40.57 48.59
CDX80647 Canola plastid 25.94 40.15
PGSC0003DMT400083161 Potato plastid 30.66 29.28
KRH54570 Soybean plastid 37.26 29.15
Solyc06g069720.2.1 Tomato plastid 27.83 28.92
AT5G61440.1 Thale cress plastid 33.02 28.57
KRH63313 Soybean plastid 35.85 28.04
VIT_17s0000g06370.t01 Wine grape cytosol, plastid 34.43 27.97
CDY56937 Canola plastid 34.43 27.97
CDY02147 Canola plastid 34.43 27.86
Bra012959.1-P Field mustard plastid 33.96 27.48
KXG39469 Sorghum plastid 36.32 27.21
EES19197 Sorghum plastid 28.3 26.79
EER92835 Sorghum plastid 33.49 26.69
Solyc03g115870.2.1 Tomato cytosol, plastid 30.66 26.64
PGSC0003DMT400050229 Potato cytosol 31.13 26.61
KXG36973 Sorghum plastid 34.91 26.43
GSMUA_Achr10P... Banana cytosol 35.38 25.34
CDY65919 Canola endoplasmic reticulum, golgi, plastid 30.19 23.7
GSMUA_Achr10P... Banana mitochondrion 34.43 20.92
Protein Annotations
MapMan:10.5.7Gene3D:3.40.30.10UniProt:A0A1Z5SB55GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0008150GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0019725
GO:GO:0045454InterPro:IPR013766EnsemblPlants:OQU93158ProteinID:OQU93158ProteinID:OQU93158.1PFAM:PF00085
PANTHER:PTHR43601PANTHER:PTHR43601:SF9EnsemblPlantsGene:SORBI_3001G491600SUPFAM:SSF52833InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domain
UniParc:UPI000B8BABF9:::::
Description
hypothetical protein
Coordinates
chr1:+:76117303..76118828
Molecular Weight (calculated)
24193.0 Da
IEP (calculated)
8.420
GRAVY (calculated)
-0.488
Length
212 amino acids
Sequence
(BLAST)
001: MSMASALTNH WVVSGSSRHD MSNRSDDCFK VLTWNHNVIK GKQFLPREKV ALTGWQITRA VPKDPKKWWE IDMKDNVINI KSQDDFDEQL LMARDKFTVV
101: HFFSPSCGAC KALHSKVHQF AEMHPGLQFL MVNCNEQTHI CKRLHVCVLP LFRFYRGAEG RICSFSCTIS TIHKFKDALK KHGVQTESQA AEKGDASPKM
201: DRDDGPIEPS ND
Best Arabidopsis Sequence Match ( AT1G08570.2 )
(BLAST)
001: MTEVISKTSL FLGACGNHHR VDDFSFSPIV FGDSQDESFR RSSAITAQTT LRIGTAQKWW EKGLKDNMRE ISSAQELVDS LTNAGDKLVV VDFFSPGCGG
101: CKALHPKICQ FAEMNPDVQF LQVNYEEHKS MCYSLGVHVL PFFRFYRGSQ GRVCSFSCTN ATIKKFRDAL AKHGPDRCSL GPTKGLEEKE LVALAANKEL
201: NFTYTPKPVP VEKEAATPDS NPSLPVPLPS MSSNDEKTLV SAGR
Arabidopsis Description
ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.