CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047555_P001	Maize	plastid	79.51	80.07
Os03t0326500-01	Rice	mitochondrion	29.68	76.36
TraesCS4A01G130400.1	Wheat	plastid	69.26	71.01
EER92835	Sorghum	plastid	66.08	70.3
TraesCS4D01G176100.1	Wheat	plastid	68.55	70.29
HORVU4Hr1G051400.3	Barley	plastid	67.84	69.57
TraesCS4B01G174100.1	Wheat	plastid	67.49	69.2
Zm00001d028992_P001	Maize	plastid	65.72	65.49
KXG36973	Sorghum	plastid	60.07	60.71
GSMUA_Achr8P21480_001	Banana	plastid	54.42	57.89
Bra031632.1-P	Field mustard	plastid	52.65	57.09
GSMUA_Achr6P32280_001	Banana	plastid	54.77	56.99
CDY06319	Canola	plastid	51.94	56.32
GSMUA_Achr5P07610_001	Banana	mitochondrion	37.81	56.02
CDY22676	Canola	plastid	53.0	55.76
GSMUA_Achr9P04970_001	Banana	plastid	54.77	55.76
PGSC0003DMT400060823	Potato	mitochondrion	44.52	54.78
AT1G08570.1	Thale cress	plastid	51.94	53.45
KRG94786	Soybean	plastid	55.83	53.2
CDX95049	Canola	plastid	50.18	52.99
CDX93552	Canola	plastid	50.88	52.94
Bra018614.1-P	Field mustard	plastid	50.18	52.4
KRH06734	Soybean	plastid	55.12	52.17
Solyc10g080730.1.1	Tomato	plastid	47.0	51.75
VIT_08s0007g07620.t01	Wine grape	plastid	53.0	48.54
Solyc12g019740.1.1	Tomato	plastid	49.47	46.82
PGSC0003DMT400048452	Potato	plastid	49.12	46.18
Bra021838.1-P	Field mustard	plastid	41.34	43.01
AT2G33270.1	Thale cress	plastid	41.34	42.86
CDY66710	Canola	plastid	32.86	41.89
CDY37738	Canola	endoplasmic reticulum	40.64	39.79
OQU93158	Sorghum	plastid	27.21	36.32
EES19197	Sorghum	plastid	28.62	36.16

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	UniProt:A0A1B6QNG8	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EnsemblPlants:KXG39469	ProteinID:KXG39469
ProteinID:KXG39469.1	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9	EnsemblPlantsGene:SORBI_3001G386200
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001C80AAC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:67364810..67366984

Molecular Weight (calculated)

30673.1 Da

IEP (calculated)

10.371

GRAVY (calculated)

-0.247

Length

283 amino acids

Sequence
(BLAST)

001: MAAAQAVAKG SVVAPCGNRA APGLLGRRRG AVAARMAPSA VRIGASWRKT AFTGGRLALG LGTRRSRPAS RSSFASPAQM NMNLAIGKSM RWWEKGLQPN
101: MREIESAQDL VDSLTNAGDK LVIVDFFSPG CGGCRALHPK ICQFAEQNPD VLFLQVNYEE HKSMCYSLHV HVLPFFRFYR GAQGRLCSFS CTNATIKKFK
201: DALAKHKPDR CSLGPTRGLE ESEFLALAAN KDLQFTYTKE PELIPRGDAP GEVIAPEPAK LPAATKPLVR LGSEERSLVS SGR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.