Factsheet for GSMUA_Achr6P32280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P04970_001	Banana	plastid	71.69	70.14
GSMUA_Achr8P21480_001	Banana	plastid	61.76	63.16
HORVU2Hr1G017310.1	Barley	cytosol	47.06	61.84
GSMUA_Achr5P07610_001	Banana	mitochondrion	41.54	59.16
EER92835	Sorghum	plastid	55.88	57.14
HORVU4Hr1G051400.3	Barley	plastid	57.72	56.88
TraesCS4D01G176100.1	Wheat	plastid	57.35	56.52
TraesCS4A01G130400.1	Wheat	plastid	57.35	56.52
TraesCS4B01G174100.1	Wheat	plastid	56.62	55.8
PGSC0003DMT400060823	Potato	mitochondrion	47.06	55.65
Bra031632.1-P	Field mustard	plastid	52.57	54.79
KXG39469	Sorghum	plastid	56.99	54.77
Os03t0326500-01	Rice	mitochondrion	21.69	53.64
KXG36973	Sorghum	plastid	55.15	53.57
AT1G08570.1	Thale cress	plastid	54.04	53.45
CDX95049	Canola	plastid	52.57	53.36
CDY22676	Canola	plastid	52.57	53.16
CDY06319	Canola	plastid	50.74	52.87
Bra018614.1-P	Field mustard	plastid	52.57	52.77
Zm00001d047555_P001	Maize	plastid	54.04	52.31
Solyc10g080730.1.1	Tomato	plastid	48.9	51.75
TraesCS2A01G100900.1	Wheat	plastid	51.84	51.65
Os07t0684100-01	Rice	plastid	52.94	51.61
KRG94786	Soybean	plastid	56.25	51.52
Zm00001d022518_P002	Maize	plastid	51.47	51.47
TraesCS2D01G100500.1	Wheat	plastid	51.47	51.47
TraesCS2B01G118100.1	Wheat	plastid	51.1	50.92
VIT_08s0007g07620.t01	Wine grape	plastid	57.72	50.81
CDX93552	Canola	plastid	50.74	50.74
KRH06734	Soybean	plastid	55.51	50.5
PGSC0003DMT400048452	Potato	plastid	54.04	48.84
Zm00001d028992_P001	Maize	plastid	50.74	48.59
Solyc12g019740.1.1	Tomato	plastid	51.84	47.16
AT2G33270.1	Thale cress	plastid	45.22	45.05
Bra021838.1-P	Field mustard	plastid	44.49	44.49
CDY37738	Canola	endoplasmic reticulum	43.01	40.48
CDY66710	Canola	plastid	32.72	40.09
GSMUA_Achr10P...	Banana	cytosol	40.81	37.5
GSMUA_Achr1P14420_001	Banana	plastid	29.41	37.21
GSMUA_Achr10P...	Banana	mitochondrion	40.81	31.81
GSMUA_Achr7P13460_001	Banana	mitochondrion	29.78	29.03

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSMUA_Achr6G32280_001	EnsemblPlants:GSMUA_Achr6P32280_001	EnsemblPlants:GSMUA_Achr6T32280_001	InterPro:IPR013766
UniProt:M0TC22	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002962A4C	SEG:seg	:	:

Description

thioredoxin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G32280_001]

Coordinates

chr6:-:31741808..31743448

Molecular Weight (calculated)

30151.1 Da

IEP (calculated)

9.390

GRAVY (calculated)

-0.374

Length

272 amino acids

Sequence
(BLAST)

001: MADALAQMTL LSPHGHRSLS RSSDRRNRLV CASKDDLLRS SSSCNSQFHG RRLVIGAQRE RPLRGNRGSS SVQMTLSFKK ASKWWEKGLH PNMKDIKSAE
101: DLVDSLSNAG DKLVIVDFFS PGCAGCRALH PKICQFAELN PDVQFLQLNH EEHKSMCYSL NVHVLPFFRF YRGAHGRLCS FSCTNATIKK FKDALAKHIT
201: ERCSLGPAKG LEETELLALA ANKDLSFTYT RTPVPVPDEL AEKAPFNPNL PVHAAARLTL ESEDKAFAAA GR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.