Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018614.1-P | Field mustard | plastid | 79.04 | 79.34 |
| CDX95049 | Canola | plastid | 75.74 | 76.87 |
| CDY22676 | Canola | plastid | 69.85 | 70.63 |
| CDY06319 | Canola | plastid | 67.28 | 70.11 |
| AT1G08570.1 | Thale cress | plastid | 70.22 | 69.45 |
| HORVU2Hr1G017310.1 | Barley | cytosol | 47.79 | 62.8 |
| Os03t0326500-01 | Rice | mitochondrion | 23.16 | 57.27 |
| PGSC0003DMT400060823 | Potato | mitochondrion | 47.06 | 55.65 |
| CDX80647 | Canola | plastid | 27.57 | 54.74 |
| TraesCS4D01G176100.1 | Wheat | plastid | 55.15 | 54.35 |
| TraesCS4A01G130400.1 | Wheat | plastid | 55.15 | 54.35 |
| TraesCS4B01G174100.1 | Wheat | plastid | 54.41 | 53.62 |
| HORVU4Hr1G051400.3 | Barley | plastid | 54.41 | 53.62 |
| EER92835 | Sorghum | plastid | 51.84 | 53.01 |
| Os07t0684100-01 | Rice | plastid | 53.31 | 51.97 |
| Zm00001d047555_P001 | Maize | plastid | 52.94 | 51.25 |
| KRG94786 | Soybean | plastid | 55.88 | 51.18 |
| KXG39469 | Sorghum | plastid | 52.94 | 50.88 |
| KRH06734 | Soybean | plastid | 55.88 | 50.84 |
| GSMUA_Achr6P32280_001 | Banana | plastid | 50.74 | 50.74 |
| TraesCS2B01G118100.1 | Wheat | plastid | 50.74 | 50.55 |
| TraesCS2A01G100900.1 | Wheat | plastid | 50.74 | 50.55 |
| GSMUA_Achr8P21480_001 | Banana | plastid | 49.26 | 50.38 |
| TraesCS2D01G100500.1 | Wheat | plastid | 50.37 | 50.37 |
| GSMUA_Achr9P04970_001 | Banana | plastid | 51.1 | 50.0 |
| Solyc10g080730.1.1 | Tomato | plastid | 47.06 | 49.81 |
| VIT_08s0007g07620.t01 | Wine grape | plastid | 56.25 | 49.51 |
| Zm00001d028992_P001 | Maize | plastid | 51.47 | 49.3 |
| KXG36973 | Sorghum | plastid | 50.74 | 49.29 |
| Solyc12g019740.1.1 | Tomato | plastid | 54.04 | 49.16 |
| PGSC0003DMT400048452 | Potato | plastid | 54.04 | 48.84 |
| Zm00001d022518_P002 | Maize | plastid | 48.53 | 48.53 |
| GSMUA_Achr5P07610_001 | Banana | mitochondrion | 33.82 | 48.17 |
| CDY66710 | Canola | plastid | 34.19 | 41.89 |
| CDY37738 | Canola | endoplasmic reticulum | 43.75 | 41.18 |
| CDY56937 | Canola | plastid | 37.87 | 39.46 |
| CDY02147 | Canola | plastid | 37.5 | 38.93 |
| CDY65919 | Canola | endoplasmic reticulum, golgi, plastid | 34.93 | 35.19 |
| CDX89357 | Canola | plastid | 25.74 | 32.41 |
| CDX90776 | Canola | plastid | 25.0 | 31.48 |
| CDX94364 | Canola | plastid | 25.0 | 31.34 |
| CDY43516 | Canola | plastid | 27.57 | 30.99 |
| CDY30208 | Canola | plastid | 26.84 | 30.42 |
| CDY54277 | Canola | plastid | 26.1 | 29.22 |
Protein Annotations
| EnsemblPlants:CDX93552 | EnsemblPlantsGene:GSBRNA2T00156228001 | Gene3D:3.40.30.10 | GO:A0A078DXE2 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | PANTHER:PTHR43601 | PANTHER:PTHR43601:SF9 | PFAM:PF00085 | PFscan:PS51352 | ProteinID:CDX93552 |
| ProteinID:CDX93552.1 | SEG:seg | SUPFAM:SSF52833 | UniParc:UPI0004EDCFCE | MapMan:10.5.7 | : |
Description
BnaA06g04960D
Coordinates
chrLK031876:-:689258..690971
Molecular Weight (calculated)
29829.5 Da
IEP (calculated)
8.748
GRAVY (calculated)
-0.317
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVISKTSL FFGGGACVNH HHHHVDDLSV SPVSFGFKKS FSSSLKQKPL RSDFSGKQIL ETFNRSFRSS SVTAQSTLRI GTAHKWWEKG SQENMREISS
101: AQDLVDSLAD AGDKLVVVDF FSPGCGGCKA LHPKMCQLAE QSPDVQFLQV NYEEHKSMCY SLGVHVLPFF RFYRGAQGRV CSFSCTNATI KKFRDALAKH
201: SPDRCSLGPT KGLEEKELVA LAANKELKFS YTPKVVPVEK EVAIPTSNPG LPVPHPSTMS GSEEKTLVSA GR
101: AQDLVDSLAD AGDKLVVVDF FSPGCGGCKA LHPKMCQLAE QSPDVQFLQV NYEEHKSMCY SLGVHVLPFF RFYRGAQGRV CSFSCTNATI KKFRDALAKH
201: SPDRCSLGPT KGLEEKELVA LAANKELKFS YTPKVVPVEK EVAIPTSNPG LPVPHPSTMS GSEEKTLVSA GR
001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR
Arabidopsis Description
ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.