Factsheet for TraesCS2D01G100500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G100900.1	Wheat	plastid	95.59	95.24
TraesCS2B01G118100.1	Wheat	plastid	93.38	93.04
HORVU2Hr1G017310.1	Barley	cytosol	68.75	90.34
Os07t0684100-01	Rice	plastid	71.32	69.53
KXG36973	Sorghum	plastid	69.85	67.86
Zm00001d022518_P002	Maize	plastid	66.91	66.91
TraesCS4D01G176100.1	Wheat	plastid	58.46	57.61
PGSC0003DMT400060823	Potato	mitochondrion	47.79	56.52
GSMUA_Achr8P21480_001	Banana	plastid	52.57	53.76
CDY06319	Canola	plastid	50.74	52.87
GSMUA_Achr9P04970_001	Banana	plastid	53.31	52.16
Bra031632.1-P	Field mustard	plastid	50.0	52.11
GSMUA_Achr6P32280_001	Banana	plastid	51.47	51.47
GSMUA_Achr5P07610_001	Banana	mitochondrion	35.66	50.79
Solyc10g080730.1.1	Tomato	plastid	47.79	50.58
CDX93552	Canola	plastid	50.37	50.37
AT1G08570.1	Thale cress	plastid	50.37	49.82
CDY22676	Canola	plastid	49.26	49.81
Bra018614.1-P	Field mustard	plastid	48.9	49.08
KRH06734	Soybean	plastid	53.68	48.83
CDX95049	Canola	plastid	47.79	48.51
KRG94786	Soybean	plastid	52.94	48.48
VIT_08s0007g07620.t01	Wine grape	plastid	53.68	47.25
PGSC0003DMT400048452	Potato	plastid	49.63	44.85
Solyc12g019740.1.1	Tomato	plastid	48.9	44.48
Bra021838.1-P	Field mustard	plastid	43.38	43.38
AT2G33270.1	Thale cress	plastid	41.18	41.03
CDY66710	Canola	plastid	31.99	39.19
CDY37738	Canola	endoplasmic reticulum	40.81	38.41
TraesCS1D01G129500.2	Wheat	plastid	28.31	35.81

Protein Annotations

EnsemblPlants:TraesCS2D01G100500.1	EnsemblPlantsGene:TraesCS2D01G100500	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	PANTHER:PTHR43601	PANTHER:PTHR43601:SF2
PFAM:PF00085	PFscan:PS51352	SEG:seg	SUPFAM:SSF52833	TIGR:cd02947	MapMan:10.5.7

Description

No Description!

Coordinates

chr2D:-:52557762..52559317

Molecular Weight (calculated)

28846.7 Da

IEP (calculated)

8.483

GRAVY (calculated)

-0.061

Length

272 amino acids

Sequence
(BLAST)

001: MASALCGGGG SVAAPCGDLG AAAALAESLP MGAGYRSKSS FPAGRVALAD RPLPRSLQAA AAAGQMNGNL TIGKAMRWWE KVTHPNMREV ESAQDLAYSL
101: LNAGDKLVVV DFFSPGCGGC RALHPKIAQF AERNPDVLFL QVNYEKHKSM CYSLHVHVLP FFRFYRGAQG RVSSFSCTNA TIKKFKDALA KHSPDRCSLG
201: PARGLEEAEL LALAANRDLE FTYNEKPTLV PIAEAIQMEA ASIGGPWMPL PAAATQPLTL GSENGSLIPS GR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.