Factsheet for TraesCS4D01G176100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G174100.1	Wheat	plastid	96.74	96.74
TraesCS4A01G130400.1	Wheat	plastid	96.74	96.74
HORVU4Hr1G051400.3	Barley	plastid	95.29	95.29
Os03t0326500-01	Rice	mitochondrion	29.35	73.64
Zm00001d047555_P001	Maize	plastid	70.29	69.04
KXG39469	Sorghum	plastid	70.29	68.55
EER92835	Sorghum	plastid	65.58	68.05
Zm00001d028992_P001	Maize	plastid	63.77	61.97
TraesCS2D01G100500.1	Wheat	plastid	57.61	58.46
GSMUA_Achr9P04970_001	Banana	plastid	58.7	58.27
GSMUA_Achr8P21480_001	Banana	plastid	56.16	58.27
GSMUA_Achr6P32280_001	Banana	plastid	56.52	57.35
Bra031632.1-P	Field mustard	plastid	52.9	55.94
Bra018614.1-P	Field mustard	plastid	54.35	55.35
CDX95049	Canola	plastid	53.62	55.22
CDX93552	Canola	plastid	54.35	55.15
CDY22676	Canola	plastid	53.62	55.02
CDY06319	Canola	plastid	51.81	54.79
PGSC0003DMT400060823	Potato	mitochondrion	45.29	54.35
KRG94786	Soybean	plastid	58.33	54.21
AT1G08570.1	Thale cress	plastid	53.99	54.18
GSMUA_Achr5P07610_001	Banana	mitochondrion	37.32	53.93
KRH06734	Soybean	plastid	57.61	53.18
Solyc10g080730.1.1	Tomato	plastid	48.91	52.53
VIT_08s0007g07620.t01	Wine grape	plastid	54.35	48.54
Solyc12g019740.1.1	Tomato	plastid	51.09	47.16
PGSC0003DMT400048452	Potato	plastid	51.09	46.84
Bra021838.1-P	Field mustard	plastid	44.57	45.22
AT2G33270.1	Thale cress	plastid	43.12	43.59
CDY66710	Canola	plastid	34.42	42.79
CDY37738	Canola	endoplasmic reticulum	42.03	40.14
TraesCS1D01G129500.2	Wheat	plastid	28.99	37.21

Protein Annotations

EnsemblPlants:TraesCS4D01G176100.1	EnsemblPlantsGene:TraesCS4D01G176100	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9
PFAM:PF00085	PFscan:PS51352	SEG:seg	SUPFAM:SSF52833	TIGR:cd02947	MapMan:10.5.7

Description

No Description!

Coordinates

chr4D:+:305379038..305380533

Molecular Weight (calculated)

30061.4 Da

IEP (calculated)

10.322

GRAVY (calculated)

-0.250

Length

276 amino acids

Sequence
(BLAST)

001: MATVQAVAKG TLVSPCGNRA AGFGARRRGA VAARMSPCAP AAVQIGRKSL FLGARLTVGP RRTKLVPRNL VASPMQMNLA FAKSTKWWEK GLQPNMREIE
101: SAQDLVDSLA NAGDRLVVVD FFSPGCGGCR ALHPKICQFA EQNPDVLFLQ VNYEEHKSMC YSLHVHVLPF FRFYRGAQGR LCSFSCTNAT IKKFRDALAK
201: HNPDRCSIGP TRGLEESELL ALAANKDLEF TYTKQPEPVP SGDREVIAPG SPRLPPPAKP LVRQGSGERT LVSSGR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.