Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048452 | Potato | plastid | 71.57 | 71.1 |
| HORVU2Hr1G017310.1 | Barley | cytosol | 42.81 | 61.84 |
| Solyc10g080730.1.1 | Tomato | plastid | 51.51 | 59.92 |
| Os03t0326500-01 | Rice | mitochondrion | 20.4 | 55.45 |
| CDY06319 | Canola | plastid | 48.16 | 55.17 |
| AT1G08570.1 | Thale cress | plastid | 50.17 | 54.55 |
| CDX93552 | Canola | plastid | 49.16 | 54.04 |
| CDX95049 | Canola | plastid | 48.16 | 53.73 |
| Bra031632.1-P | Field mustard | plastid | 46.82 | 53.64 |
| Bra018614.1-P | Field mustard | plastid | 48.16 | 53.14 |
| EER92835 | Sorghum | plastid | 47.16 | 53.01 |
| KRG94786 | Soybean | plastid | 52.51 | 52.86 |
| CDY22676 | Canola | plastid | 47.49 | 52.79 |
| GSMUA_Achr6P32280_001 | Banana | plastid | 47.16 | 51.84 |
| GSMUA_Achr8P21480_001 | Banana | plastid | 45.48 | 51.13 |
| TraesCS4D01G176100.1 | Wheat | plastid | 47.16 | 51.09 |
| TraesCS4A01G130400.1 | Wheat | plastid | 47.16 | 51.09 |
| GSMUA_Achr9P04970_001 | Banana | plastid | 47.49 | 51.08 |
| TraesCS4B01G174100.1 | Wheat | plastid | 46.82 | 50.72 |
| KRH06734 | Soybean | plastid | 50.5 | 50.5 |
| HORVU4Hr1G051400.3 | Barley | plastid | 46.49 | 50.36 |
| GSMUA_Achr5P07610_001 | Banana | mitochondrion | 31.77 | 49.74 |
| KXG39469 | Sorghum | plastid | 46.82 | 49.47 |
| TraesCS2B01G118100.1 | Wheat | plastid | 44.82 | 49.08 |
| TraesCS2A01G100900.1 | Wheat | plastid | 44.82 | 49.08 |
| Solyc06g069720.2.1 | Tomato | plastid | 33.44 | 49.02 |
| TraesCS2D01G100500.1 | Wheat | plastid | 44.48 | 48.9 |
| VIT_08s0007g07620.t01 | Wine grape | plastid | 50.5 | 48.87 |
| Zm00001d028992_P001 | Maize | plastid | 45.82 | 48.24 |
| Zm00001d047555_P001 | Maize | plastid | 45.15 | 48.04 |
| Os07t0684100-01 | Rice | plastid | 44.82 | 48.03 |
| Zm00001d022518_P002 | Maize | plastid | 43.48 | 47.79 |
| KXG36973 | Sorghum | plastid | 44.15 | 47.14 |
| AT2G33270.1 | Thale cress | plastid | 42.14 | 46.15 |
| Solyc03g115870.2.1 | Tomato | cytosol, plastid | 37.46 | 45.9 |
| Bra021838.1-P | Field mustard | plastid | 41.47 | 45.59 |
| CDY66710 | Canola | plastid | 32.11 | 43.24 |
| CDY37738 | Canola | endoplasmic reticulum | 41.14 | 42.56 |
| Solyc03g121480.2.1 | Tomato | plastid | 23.41 | 35.35 |
Protein Annotations
| EnsemblPlants:Solyc12g019740.1.1 | EnsemblPlantsGene:Solyc12g019740.1 | Gene3D:3.40.30.10 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain |
| PANTHER:PTHR43601 | PANTHER:PTHR43601:SF9 | PFAM:PF00085 | PFscan:PS51352 | SEG:seg | SUPFAM:SSF52833 |
| UniParc:UPI0002769868 | UniProt:K4DDJ7 | MapMan:10.5.7 | : | : | : |
Description
No Description!
Coordinates
chr12:+:11252542..11254118
Molecular Weight (calculated)
33298.0 Da
IEP (calculated)
8.601
GRAVY (calculated)
-0.344
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKLMSKGFI FPSSSSDCGE IYDRLRLNLH GICSFPNKSV NLSCLPSLKL SSSCLPRTDF YGRRLVINEG LSNFNRRVAD ITAQMSVGIK KAQKWWEKGV
101: QPNMKEVNSA QELVDSLLSA GDKLVVVDFF SPGCGGCKAL HPKLCQLAEM NPDVQFLQVN YEEHKSMCYS LNVHVLPFFR FYRGAEGRVC SFSCTNATIK
201: KFRDALAKYG TDRCTIGSPK GLEEKELLAL AANKDLSFNY TPKTEEEPIL VTSQKEVRDR TTPNIESPLP LPLPLPITST SSQTAKRDTE KEAYATSGR
101: QPNMKEVNSA QELVDSLLSA GDKLVVVDFF SPGCGGCKAL HPKLCQLAEM NPDVQFLQVN YEEHKSMCYS LNVHVLPFFR FYRGAEGRVC SFSCTNATIK
201: KFRDALAKYG TDRCTIGSPK GLEEKELLAL AANKDLSFNY TPKTEEEPIL VTSQKEVRDR TTPNIESPLP LPLPLPITST SSQTAKRDTE KEAYATSGR
001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR
Arabidopsis Description
ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.