Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050229 | Potato | cytosol | 77.05 | 75.81 |
| CDX80647 | Canola | plastid | 35.66 | 63.5 |
| Solyc06g069720.2.1 | Tomato | plastid | 49.18 | 58.82 |
| VIT_17s0000g06370.t01 | Wine grape | cytosol, plastid | 54.92 | 51.34 |
| KRH54570 | Soybean | plastid | 56.56 | 50.92 |
| KRH63313 | Soybean | plastid | 53.69 | 48.34 |
| AT5G61440.1 | Thale cress | plastid | 45.49 | 45.31 |
| CDY56937 | Canola | plastid | 46.72 | 43.68 |
| Bra012959.1-P | Field mustard | plastid | 46.31 | 43.13 |
| Solyc10g080730.1.1 | Tomato | plastid | 45.08 | 42.8 |
| CDY02147 | Canola | plastid | 45.9 | 42.75 |
| CDY65919 | Canola | endoplasmic reticulum, golgi, plastid | 42.21 | 38.15 |
| Solyc12g019740.1.1 | Tomato | plastid | 45.9 | 37.46 |
| Solyc03g121480.2.1 | Tomato | plastid | 29.1 | 35.86 |
| GSMUA_Achr10P... | Banana | cytosol | 43.44 | 35.81 |
| GSMUA_Achr10P... | Banana | mitochondrion | 49.59 | 34.67 |
| OQU93158 | Sorghum | plastid | 26.64 | 30.66 |
| Os03t0168500-00 | Rice | plastid | 18.85 | 25.99 |
Protein Annotations
| EnsemblPlants:Solyc03g115870.2.1 | EnsemblPlantsGene:Solyc03g115870.2 | Gene3D:3.40.30.10 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain |
| PANTHER:PTHR43601 | PANTHER:PTHR43601:SF4 | PFAM:PF00085 | PFscan:PS51352 | SUPFAM:SSF52833 | UniParc:UPI0002768B4D |
| UniProt:K4BL89 | MapMan:10.5.7 | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:65472035..65473596
Molecular Weight (calculated)
26913.6 Da
IEP (calculated)
8.315
GRAVY (calculated)
-0.123
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MACLLKTGFS VNSSIGALQV TDLTPNEFMG KSLDVSNQKI GFSHLNVKPP RPISISAQAS ICVSKALRWW DKTLKPNMVE IHSAKELADS LLNAGDRLVI
101: IDFYSPGCGG CRTLHPKICQ LAESNPDAIF LKVNYEELKS MCHALRIHVL PFFRFYRGAE GKLCSFSCTN ATIKKFKDAL GRYGTERCSL GPAKGLDESE
201: LLALASIGQL SRNDDYDYPV KKVYVDLTDN KNLGLKESSE LLMA
101: IDFYSPGCGG CRTLHPKICQ LAESNPDAIF LKVNYEELKS MCHALRIHVL PFFRFYRGAE GKLCSFSCTN ATIKKFKDAL GRYGTERCSL GPAKGLDESE
201: LLALASIGQL SRNDDYDYPV KKVYVDLTDN KNLGLKESSE LLMA
001: MDAISSLGTN CVLSGVSPFS QENQSKSKLS PFMSLDLKEH PMASADFTNQ TLTAFSSSSA SPFQAKTSSI GMSRGMRWWE KSTNHNMLEI QSANHLVDSL
101: LNAGDRLVVL DFYSPGCGGC KSLHPKICQL AETNPNVMFL KVNQEELRTM CHGLNVHVLP FFKFYRGAEG KVCSFSCTIA TINKFKKALD KHGSERCSLG
201: DAKGLDEKEL AALASVGELK MNSLTMHQAS NIGYKTEEQY QTMVL
101: LNAGDRLVVL DFYSPGCGGC KSLHPKICQL AETNPNVMFL KVNQEELRTM CHGLNVHVLP FFKFYRGAEG KVCSFSCTIA TINKFKKALD KHGSERCSLG
201: DAKGLDEKEL AALASVGELK MNSLTMHQAS NIGYKTEEQY QTMVL
Arabidopsis Description
ACHT5Thioredoxin-like 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFI1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.