CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80647	Canola	plastid	34.81	68.61
CDY56937	Canola	plastid	58.89	60.92
CDY02147	Canola	plastid	58.15	59.92
AT5G61440.1	Thale cress	plastid	49.63	54.69
PGSC0003DMT400083161	Potato	plastid	35.56	43.24
Solyc06g069720.2.1	Tomato	plastid	32.59	43.14
Solyc03g115870.2.1	Tomato	cytosol, plastid	38.15	42.21
PGSC0003DMT400050229	Potato	cytosol	38.52	41.94
VIT_17s0000g06370.t01	Wine grape	cytosol, plastid	40.37	41.76
KRH54570	Soybean	plastid	37.78	37.64
KRH63313	Soybean	plastid	36.67	36.53
CDX95049	Canola	plastid	35.93	36.19
CDX93552	Canola	plastid	35.19	34.93
CDY06319	Canola	plastid	33.7	34.87
CDY22676	Canola	plastid	34.44	34.57
CDY66710	Canola	plastid	25.93	31.53
OQU93158	Sorghum	plastid	23.7	30.19
CDY37738	Canola	endoplasmic reticulum	31.85	29.76
GSMUA_Achr10P...	Banana	cytosol	31.11	28.38
CDY30208	Canola	plastid	23.7	26.67
CDY54277	Canola	plastid	23.33	25.93
GSMUA_Achr10P...	Banana	mitochondrion	33.33	25.79
Os03t0168500-00	Rice	plastid	16.3	24.86
CDY43516	Canola	plastid	22.22	24.79
CDX94364	Canola	plastid	17.78	22.12
CDX90776	Canola	plastid	17.41	21.76
CDX89357	Canola	plastid	17.41	21.76

Protein Annotations

EnsemblPlants:CDY65919	EnsemblPlantsGene:GSBRNA2T00051008001	Gene3D:3.40.30.10	GO:A0A078JGT7	GO:GO:0005575	GO:GO:0005623
InterPro:Thioredoxin-like_sf	PANTHER:PTHR43601	PANTHER:PTHR43601:SF4	ProteinID:CDY65919	ProteinID:CDY65919.1	SUPFAM:SSF52833
UniParc:UPI0004EEDC4F	UniProt:A0A078JGT7	MapMan:10.5.7	:	:	:

Description

BnaC01g42880DBnaC01g42880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGT7]

Coordinates

chrLK035001:-:16271..17816

Molecular Weight (calculated)

30613.4 Da

IEP (calculated)

9.449

GRAVY (calculated)

-0.183

Length

270 amino acids

Sequence
(BLAST)

001: MDWIKSIIIM NPVGYRRTPP KALEQNNKFL HKLLLLIGNR SWAFWVLFIF SGKQIKIQTF TGYDEPGFEG TSHGLKPNTH RFVFFFLCAV LLGFRQRHSP
101: IGMSKGMRWW EKSTKENMLE IHSANHLVDS LLKAGDRLVV LDFYSPGCGG CKSLHPKSES EELRTMCHGL NVHVLPFFKF YRGAEGKLCS FSCTISTINK
201: FKKALEKHGS ERCSLGPAKG LDSKELMALA SVGELKMNLD SLTMHQDVLL SSSASSFCYK TEEQHEKMVV

Best Arabidopsis Sequence Match ( AT5G61440.1 )
(BLAST)

001: MDAISSLGTN CVLSGVSPFS QENQSKSKLS PFMSLDLKEH PMASADFTNQ TLTAFSSSSA SPFQAKTSSI GMSRGMRWWE KSTNHNMLEI QSANHLVDSL
101: LNAGDRLVVL DFYSPGCGGC KSLHPKICQL AETNPNVMFL KVNQEELRTM CHGLNVHVLP FFKFYRGAEG KVCSFSCTIA TINKFKKALD KHGSERCSLG
201: DAKGLDEKEL AALASVGELK MNSLTMHQAS NIGYKTEEQY QTMVL

Arabidopsis Description

ACHT5Thioredoxin-like 1-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFI1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.