CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90776	Canola	plastid	89.4	89.81
Bra026460.1-P	Field mustard	plastid	83.41	83.8
CDX89357	Canola	plastid	78.34	78.7
AT4G26160.1	Thale cress	plastid	68.2	66.97
PGSC0003DMT400006408	Potato	plastid	47.0	52.31
Solyc03g121480.2.1	Tomato	plastid	47.0	51.52
VIT_09s0002g02380.t01	Wine grape	plastid	46.54	46.76
Os05t0200100-01	Rice	plastid	46.54	46.76
HORVU1Hr1G028680.1	Barley	plastid	46.08	46.51
TraesCS1D01G129500.2	Wheat	plastid	45.16	45.58
TraesCS1B01G142600.2	Wheat	plastid	45.16	45.58
TraesCS1A01G124400.2	Wheat	plastid	43.32	44.34
CDY43516	Canola	plastid	48.39	43.39
EES19197	Sorghum	plastid	44.24	42.86
Zm00001d037748_P001	Maize	plastid	43.32	42.34
CDY30208	Canola	plastid	45.16	40.83
CDY54277	Canola	plastid	45.16	40.33
CDX80647	Canola	plastid	23.5	37.23
GSMUA_Achr7P13460_001	Banana	mitochondrion	46.54	36.2
Zm00001d010000_P001	Maize	plastid	25.81	34.78
CDY66710	Canola	plastid	28.57	27.93
CDY06319	Canola	plastid	31.8	26.44
CDX95049	Canola	plastid	31.34	25.37
CDY22676	Canola	plastid	31.34	25.28
CDX93552	Canola	plastid	31.34	25.0
CDY37738	Canola	endoplasmic reticulum	30.88	23.18
CDY56937	Canola	plastid	26.73	22.22
CDY02147	Canola	plastid	25.81	21.37
CDY65919	Canola	endoplasmic reticulum, golgi, plastid	22.12	17.78

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	GO:A0A078E144	EnsemblPlants:CDX94364	ProteinID:CDX94364	ProteinID:CDX94364.1
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
EnsemblPlantsGene:GSBRNA2T00157483001	InterPro:IPR013766	PFAM:PF00085	ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR43601
PANTHER:PTHR43601:SF10	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0004EB8E67
SEG:seg	:	:	:	:	:

Description

BnaC01g18200D

Coordinates

chrLK031881:-:531399..532589

Molecular Weight (calculated)

24165.7 Da

IEP (calculated)

8.802

GRAVY (calculated)

-0.323

Length

217 amino acids

Sequence
(BLAST)

001: MSPPTSFRSL YASSSTRTPI SPQIRIIPLL NSCKRPYGLS FSTSSSLPSS SSNLFFSSSR KQSLSIKVQA LAAETEQPKW WEKKAGPNMI DITSTEQFLN
101: ALKDAGDRLV IVDFYGTWCG SCRAMFPKLC KTAEEHPEIL FLKINFDENK SLCKSLNVKV LPYFHLYRGS DGQVDSFSCS LAKFKKLRDA IERHNVGISS
201: DHSSSVSEQI EDSTSSL

Best Arabidopsis Sequence Match ( AT4G26160.1 )
(BLAST)

001: MSPTTTSLRS LSFSLYASSN STPISTPIEA RQLLSSCNRF YGLSSSSSSS SLTTSSLIGN LVFSSRNQSL SVKVQALAAE TEQPKWWERK AGPNMIDITS
101: AEQFLNALKD AGDRLVIVDF YGTWCGSCRA MFPKLCKTAK EHPNILFLKV NFDENKSLCK SLNVKVLPYF HFYRGADGQV ESFSCSLAKF QKLREAIERH
201: NVGSISNISS SASEKVEDSS E

Arabidopsis Description

ACHT1Thioredoxin-like 2-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LEK4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.