CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0326500-01	Rice	mitochondrion	28.57	69.09
TraesCS4A01G130400.1	Wheat	plastid	68.8	66.3
KXG39469	Sorghum	plastid	70.3	66.08
TraesCS4D01G176100.1	Wheat	plastid	68.05	65.58
HORVU4Hr1G051400.3	Barley	plastid	68.05	65.58
TraesCS4B01G174100.1	Wheat	plastid	66.92	64.49
KXG36973	Sorghum	plastid	61.65	58.57
GSMUA_Achr8P21480_001	Banana	plastid	56.02	56.02
CDY06319	Canola	plastid	54.89	55.94
GSMUA_Achr6P32280_001	Banana	plastid	57.14	55.88
Bra031632.1-P	Field mustard	plastid	53.76	54.79
GSMUA_Achr9P04970_001	Banana	plastid	57.14	54.68
PGSC0003DMT400060823	Potato	mitochondrion	46.62	53.91
CDY22676	Canola	plastid	54.51	53.9
AT1G08570.1	Thale cress	plastid	54.89	53.09
CDX93552	Canola	plastid	53.01	51.84
CDX95049	Canola	plastid	51.88	51.49
Bra018614.1-P	Field mustard	plastid	52.26	51.29
GSMUA_Achr5P07610_001	Banana	mitochondrion	36.47	50.79
Solyc10g080730.1.1	Tomato	plastid	48.87	50.58
KRH06734	Soybean	plastid	56.77	50.5
KRG94786	Soybean	plastid	56.02	50.17
Solyc12g019740.1.1	Tomato	plastid	53.01	47.16
PGSC0003DMT400048452	Potato	plastid	51.13	45.18
VIT_08s0007g07620.t01	Wine grape	plastid	52.26	44.98
Bra021838.1-P	Field mustard	plastid	43.23	42.28
AT2G33270.1	Thale cress	plastid	42.11	41.03
CDY37738	Canola	endoplasmic reticulum	42.11	38.75
CDY66710	Canola	plastid	32.33	38.74
OQU93158	Sorghum	plastid	26.69	33.49
EES19197	Sorghum	plastid	26.69	31.7

Protein Annotations

MapMan:10.5.7	Gene3D:3.40.30.10	UniProt:C5WXT8	EnsemblPlants:EER92835	ProteinID:EER92835	ProteinID:EER92835.1
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	PFAM:PF00085	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9	EnsemblPlantsGene:SORBI_3001G499600
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001A82B3E	RefSeq:XP_002465837.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:76910460..76912852

Molecular Weight (calculated)

28991.8 Da

IEP (calculated)

10.195

GRAVY (calculated)

-0.309

Length

266 amino acids

Sequence
(BLAST)

001: MAAAQAMAKG SVGQGSLGRR RGAEAARVGG SWRKSAFLGG RLAVGPRRPR PVSRILVTSP AVQQTNLSFA KAMKWWQKGL QPNMRAIQTA QDLADSLTNA
101: GDGLVVVDFF SPGCAGCHAL HPKICQFAER NPDVQFLQVN YEEHKSMCHS LHVHVFPFFR FYRGAQGRLC SFSCTNATIK KFRDALAKHR ADRCSLGPTR
201: GLEESELLAL AANKDLQFTY TKEAELAPSM EDVAEVMTAD RPGLPTSTMP LARQGSEDRA LVSSGR

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.