Factsheet for PGSC0003DMT400060823

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080730.1.1	Tomato	plastid	74.78	66.93
HORVU2Hr1G017310.1	Barley	cytosol	55.22	61.35
PGSC0003DMT400048452	Potato	plastid	68.7	52.49
AT1G08570.1	Thale cress	plastid	59.13	49.45
VIT_08s0007g07620.t01	Wine grape	plastid	65.65	48.87
CDY06319	Canola	plastid	55.22	48.66
Bra031632.1-P	Field mustard	plastid	55.22	48.66
TraesCS2B01G118100.1	Wheat	plastid	56.96	47.99
TraesCS2A01G100900.1	Wheat	plastid	56.96	47.99
TraesCS2D01G100500.1	Wheat	plastid	56.52	47.79
CDY22676	Canola	plastid	55.65	47.58
CDX95049	Canola	plastid	55.22	47.39
KRG94786	Soybean	plastid	60.87	47.14
CDX93552	Canola	plastid	55.65	47.06
GSMUA_Achr6P32280_001	Banana	plastid	55.65	47.06
Bra018614.1-P	Field mustard	plastid	55.22	46.86
EER92835	Sorghum	plastid	53.91	46.62
Os03t0326500-01	Rice	mitochondrion	22.17	46.36
Zm00001d022518_P002	Maize	plastid	54.78	46.32
GSMUA_Achr8P21480_001	Banana	plastid	53.48	46.24
KRH06734	Soybean	plastid	60.0	46.15
KXG36973	Sorghum	plastid	56.09	46.07
Os07t0684100-01	Rice	plastid	55.65	45.88
GSMUA_Achr5P07610_001	Banana	mitochondrion	37.83	45.55
TraesCS4B01G174100.1	Wheat	plastid	54.35	45.29
TraesCS4A01G130400.1	Wheat	plastid	54.35	45.29
TraesCS4D01G176100.1	Wheat	plastid	54.35	45.29
PGSC0003DMT400050229	Potato	cytosol	48.7	45.16
KXG39469	Sorghum	plastid	54.78	44.52
GSMUA_Achr9P04970_001	Banana	plastid	53.48	44.24
HORVU4Hr1G051400.3	Barley	plastid	53.04	44.2
Zm00001d047555_P001	Maize	plastid	53.91	44.13
Zm00001d028992_P001	Maize	plastid	53.48	43.31
AT2G33270.1	Thale cress	plastid	51.3	43.22
PGSC0003DMT400083161	Potato	plastid	41.3	42.79
Bra021838.1-P	Field mustard	plastid	50.0	42.28
CDY37738	Canola	endoplasmic reticulum	51.3	40.83
CDY66710	Canola	plastid	37.39	38.74
PGSC0003DMT400006408	Potato	plastid	27.39	32.31
PGSC0003DMT400008881	Potato	plastid	29.13	28.76

Protein Annotations

MapMan:10.5.7	EntrezGene:102604077	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	UniProt:M1C6H2	PFAM:PF00085
EnsemblPlantsGene:PGSC0003DMG400023659	PGSC:PGSC0003DMG400023659	EnsemblPlants:PGSC0003DMT400060823	PFscan:PS51352	PANTHER:PTHR43601	PANTHER:PTHR43601:SF9
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000296CB85	SEG:seg	:

Description

Thioredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400023659]

Coordinates

chr10:+:57252190..57254670

Molecular Weight (calculated)

25429.8 Da

IEP (calculated)

8.793

GRAVY (calculated)

-0.267

Length

230 amino acids

Sequence
(BLAST)

001: MKFNRRNHKS AAATAQMSIG IRKAPKWWEK GLQPNMKEVM GAQDLADTLL NAGDKLVVVD FLSPGCGGCK ALHPKICQLA EMNPDVQFLH VNYEEHKSMC
101: YSLNVHVLPF FRFYRGAEGR LCSFSCTNAT IKKFKDALTK YGADCCSLEP VKGLEEKELL ALAANKDLSF AYTPKTEEPM PVALQDAKVI KTSRTSSSCP
201: NTFSLLPLPL PLPLASTSHK AKQDSKSEVF

Best Arabidopsis Sequence Match ( AT1G08570.1 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPVS FGGFGLKKSF SCLKLKSQKP LRSVFYGKQI VFGDSQDESF RRSSAITAQT TLRIGTAQKW WEKGLKDNMR
101: EISSAQELVD SLTNAGDKLV VVDFFSPGCG GCKALHPKIC QFAEMNPDVQ FLQVNYEEHK SMCYSLGVHV LPFFRFYRGS QGRVCSFSCT NATIKKFRDA
201: LAKHGPDRCS LGPTKGLEEK ELVALAANKE LNFTYTPKPV PVEKEAATPD SNPSLPVPLP SMSSNDEKTL VSAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.