Factsheet for HORVU2Hr1G017310.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G100900.1	Wheat	plastid	93.72	71.06
TraesCS2B01G118100.1	Wheat	plastid	93.24	70.7
TraesCS2D01G100500.1	Wheat	plastid	90.34	68.75
Os07t0684100-01	Rice	plastid	77.78	57.71
Zm00001d022518_P002	Maize	plastid	75.36	57.35
KXG36973	Sorghum	plastid	76.81	56.79
PGSC0003DMT400060823	Potato	mitochondrion	61.35	55.22
GSMUA_Achr8P21480_001	Banana	plastid	65.7	51.13
HORVU4Hr1G051400.3	Barley	plastid	67.63	50.72
Bra031632.1-P	Field mustard	plastid	62.8	49.81
CDY06319	Canola	plastid	61.84	49.04
GSMUA_Achr9P04970_001	Banana	plastid	65.22	48.56
AT1G08570.1	Thale cress	plastid	63.77	48.0
Bra018614.1-P	Field mustard	plastid	62.8	47.97
CDX93552	Canola	plastid	62.8	47.79
CDX95049	Canola	plastid	61.84	47.76
GSMUA_Achr5P07610_001	Banana	mitochondrion	43.96	47.64
Solyc10g080730.1.1	Tomato	plastid	58.45	47.08
GSMUA_Achr6P32280_001	Banana	plastid	61.84	47.06
CDY22676	Canola	plastid	60.87	46.84
KRG94786	Soybean	plastid	65.22	45.45
KRH06734	Soybean	plastid	65.22	45.15
VIT_08s0007g07620.t01	Wine grape	plastid	65.7	44.01
PGSC0003DMT400048452	Potato	plastid	62.32	42.86
Solyc12g019740.1.1	Tomato	plastid	61.84	42.81
Bra021838.1-P	Field mustard	plastid	53.14	40.44
CDY66710	Canola	plastid	41.55	38.74
AT2G33270.1	Thale cress	plastid	50.72	38.46
CDY37738	Canola	endoplasmic reticulum	52.66	37.72
HORVU1Hr1G028680.1	Barley	plastid	30.92	29.77

Protein Annotations

EnsemblPlants:HORVU2Hr1G017310.1	EnsemblPlantsGene:HORVU2Hr1G017310	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
PANTHER:PTHR43601	PANTHER:PTHR43601:SF2	PFAM:PF00085	PFscan:PS51352	SEG:seg	SUPFAM:SSF52833
UniParc:UPI000296BF64	UniProt:M0YL47	MapMan:10.5.7	:	:	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0YL47]

Coordinates

chrchr2H:-:40342595..40343695

Molecular Weight (calculated)

22760.4 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.251

Length

207 amino acids

Sequence
(BLAST)

001: MNGNLTIGKA MRWWEKGTQP NMREVESAQD LADSLLNAGD KLVVVDFFSP GCGGCRALHP KIAQFAERNP DVLFLQVNYE KHKSMCYSLH VHVLPFFRFY
101: RGAQGRVSSF SCTNATIKKF KDALAKHSPD RCSLGPARGL EKAELLALAE NRDLEFTYSE KPTLVPIAEA IRMEAASIGG PWLPLPPAAT QPFPLGSENG
201: SLIPSGR

Best Arabidopsis Sequence Match ( AT1G08570.2 )
(BLAST)

001: MTEVISKTSL FLGACGNHHR VDDFSFSPIV FGDSQDESFR RSSAITAQTT LRIGTAQKWW EKGLKDNMRE ISSAQELVDS LTNAGDKLVV VDFFSPGCGG
101: CKALHPKICQ FAEMNPDVQF LQVNYEEHKS MCYSLGVHVL PFFRFYRGSQ GRVCSFSCTN ATIKKFRDAL AKHGPDRCSL GPTKGLEEKE LVALAANKEL
201: NFTYTPKPVP VEKEAATPDS NPSLPVPLPS MSSNDEKTLV SAGR

Arabidopsis Description

ACHT4Thioredoxin-like 1-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64654]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.